Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1450 ATGAATTCTTCATTCTTTCACTCCCAAAATGCCGATCTCTCGCCGGAATCTTCCTTTGGCTCCTTCGAATCCCTCCGATGGGAAGGTTTTCAAATAAACGACAACTCTCTGCCCTTCAACGAGAATGATTCCGGAGAAATGCTCCTTCACAGCTTAATCTCCGAGGCTGCCGTGTACCCGTCGGAGAATTCCCCCCGGCAGGCTCCGATCAAAGACGAGGAGGTTGATTCGCTGGGAGAAGAAGACCCCCACAAGAGAAAGTCATACAGAGGAGTCCGCCGGCGACCGTGGGGAAAATTCGCGGCGGAGATACGAGACTCGACCCGACATGGGGTTCGGGTTTGGCTCGGGACATTCGACAGCGCCGAGGCGGCTGCTTTGGCCTACGATCAAGCTGCTTTTTCAATGAGAGGCCCTGCTGCCGTTCTCAATTTTCCGGTGGAAAGAGTTCAGGAATCGCTCAAGGAGATGGAGATGATCAACTCCGCCGCATACGGAGGCGATGGCGAGGGAGACAGCGAATCTCCGGTGGTGGCTCTGAAGAGAAAACACTCTATGAGGAAGAAATTCACGAGAAGAAAGAGCAAAGAGAGAGATGGGATTGAGAAGATTGAGAATAATGTGGTAGTTTTGGAAGATCTTGGCTCTGATTATTTGGAAGAACTTCTAAAGTCGTCGGAGAATCTCCGACCGTGGTGA 699 51.65 MNSSFFHSQNADLSPESSFGSFESLRWEGFQINDNSLPFNENDSGEMLLHSLISEAAVYPSENSPRQAPIKDEEVDSLGEEDPHKRKSYRGVRRRPWGKFAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGPAAVLNFPVERVQESLKEMEMINSAAYGGDGEGDSESPVVALKRKHSMRKKFTRRKSKERDGIEKIENNVVVLEDLGSDYLEELLKSSENLRPW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8907229 8907927 + CrPI670011_06g014500.1 Cre06g1450 500912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1450 232 Gene3D AP2/ERF domain 87 148 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 CDD AP2 87 147 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 MobiDBLite consensus disorder prediction 67 87 - -
Cre06g1450 232 SMART rav1_2 88 152 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 FunFam Ethylene-responsive transcription factor 2 87 148 - -
Cre06g1450 232 Pfam AP2 domain 88 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 SUPERFAMILY DNA-binding domain 88 148 IPR016177 GO:0003677(InterPro)
Cre06g1450 232 ProSiteProfiles AP2/ERF domain profile. 88 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 PANTHER DNA-BINDING DOMAIN 61 189 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cre06g1450 232 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1450 232 MobiDBLite consensus disorder prediction 60 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1956 Cre-Chr4:37045143 Cre06g1450 Cre-Chr6:8907229 2.60E-27 dispersed
Cre04g1957 Cre-Chr4:37046024 Cre06g1450 Cre-Chr6:8907229 9.00E-25 dispersed
Cre05g0527 Cre-Chr5:4680056 Cre06g1450 Cre-Chr6:8907229 3.80E-66 dispersed
Cre06g1450 Cre-Chr6:8907229 Cre07g0463 Cre-Chr7:2396133 1.40E-42 dispersed
Cre06g1449 Cre-Chr6:8856471 Cre06g1450 Cre-Chr6:8907229 5.50E-22 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53876 PF00847 AP2 6.00E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1450 K14516 - csv:101206564 400.979