Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1468 ATGGGGCATCCGAATCATGAAGACAGAGTGTTCCTCTTCTTCACTGCTGCTTCTTCTTCACCCGAAATCGCGGGCCGTTCATTATCCGATCTACGAGGTCGGATGTGTCTACTGCTCTCAAAATCACATTATCTAACCTACTGGAGACGTACTGCTCGGTATATGTATATTTGCCGTACCACAACAATGGAAGCTACTAGGTGTTGGTTTAATAAGTTTAGATCCAAAGACAAGCCAAAGCCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCAAGAGCACCAACCAGTGAAGATGTACCCTCAAATGTGACCAAGCAGAAGGTTGCAGCTGCCAAGCAGTACATAGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTACTGGAAAAGAAGTTGGCTGATGCTGAGGTCTCTCAGGAAGAGCAAAGCAACCTGCTCAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAAAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGGAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCCATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACACGTGAAAGCTGAAAGGAATCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACCGAAGACGAGGCTCGGTTTTATGTTGGTGAAACAGTTTTAGCTATCGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCGGATAACTTACTTCTTGACAAGGACGGCCATATGAAATTATCAGATTTCGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAGTAACCTCAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACACAACAGGAACAACTGCAGCATTGGCAAAGGAATAGGCGGATGCTTGCTTATTCAACAGTTGGAACTCCTGATTATATTGCCCCGGAAGTTTTGTTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTACGAAATGCTTGTGGGATTCCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGCAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAGCTCTCTCCAGAAGCGAAGGATCTAATTAGTAAACTCTTATGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCACACCCGTGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAACTTTGAGAAGTTTGAAGAGACTGAAAACGCAATTCAAACTTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCGAAGGATATCAATTTTGTTGGTTATACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAACTGAAGAAGAAGACCGCAAAATCTAAAAGACCTTCCATCAAATCACTTTTTGATAACGAATCTGCAATGGCTAATCAACCTGTTCAAGGAAGCTTTCTGAAACTCTTGCCTCCCCAACTAGAAGTCCCTGAGAAACCGATGAGCGCCAATGAGAAGCATTCATAA 1842 41.75 MGHPNHEDRVFLFFTAASSSPEIAGRSLSDLRGRMCLLLSKSHYLTYWRRTARYMYICRTTTMEATRCWFNKFRSKDKPKPSTNKESTGNARDASRAPTSEDVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLEKKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGSNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENAIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKTAKSKRPSIKSLFDNESAMANQPVQGSFLKLLPPQLEVPEKPMSANEKHS 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9225198 9232817 + CrPI670011_06g014680.1 Cre06g1468 500930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1468 613 Pfam Protein kinase domain 377 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 Pfam Protein kinase domain 183 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 SMART pkinase_C_6 481 545 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 FunFam Non-specific serine/threonine protein kinase 152 264 - -
Cre06g1468 613 ProSiteProfiles AGC-kinase C-terminal domain profile. 481 553 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 PANTHER SERINE/THREONINE-PROTEIN KINASE 86 547 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre06g1468 613 MobiDBLite consensus disorder prediction 84 109 - -
Cre06g1468 613 CDD STKc_NDR_like 179 544 - -
Cre06g1468 613 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524(InterPro)
Cre06g1468 613 Pfam Protein kinase C terminal domain 499 543 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 FunFam Non-specific serine/threonine protein kinase 379 498 - -
Cre06g1468 613 Gene3D Transferase(Phosphotransferase) domain 1 267 497 - -
Cre06g1468 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 ProSiteProfiles Protein kinase domain profile. 181 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1468 613 MobiDBLite consensus disorder prediction 76 109 - -
Cre06g1468 613 Coils Coil 130 164 - -
Cre06g1468 613 Gene3D Phosphorylase Kinase; domain 1 171 266 - -
Cre06g1468 613 CDD MobB_NDR_LATS-like 115 176 - -
Cre06g1468 613 FunFam Non-specific serine/threonine protein kinase 265 332 - -
Cre06g1468 613 SUPERFAMILY Protein kinase-like (PK-like) 156 533 IPR011009 -
Cre06g1468 613 SMART serkin_6 181 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g2147 Cre-Chr4:38609801 Cre06g1468 Cre-Chr6:9225198 4.50E-222 dispersed
Cre05g1972 Cre-Chr5:31843237 Cre06g1468 Cre-Chr6:9225198 2.90E-183 dispersed
Cre06g1468 Cre-Chr6:9225198 Cre09g0757 Cre-Chr9:7413606 5.60E-245 dispersed
Cre06g1468 Cre-Chr6:9225198 Cre03g1807 Cre-Chr3:34920700 8.50E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64209 PF00069 Pkinase 1.30E-65 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1468 K08790 - csv:101205120 1102.81