Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1509 ATGCTTGACAATAACGACGTCTTCTCCATAAAGTTGTTGATATCCCACCTCTTATCGGCTTACCCCTTGACTTTGAAGGACCTATTCAAAAAGTTATGGAAGTTCCCTTGCCCTGAGAGGATCAAATTCCAGAAAGAAATCAGGGATGACGTTGAAAAGGATGCAGTTGATGAAACTGAATATTATGCATGGAATGAGTTGAGACTCCATCCTTTGCTTATGAAATCGATCTACAAACTTGGGTTTAAGGAACCTACAGCAATCCAGAAAGCTTGTATTCCAGCTGCTGCTTACCAGGGGAAGGATGTTGTTGGTGCTGCTGAGACAGGATCTGGAAAAACACTAGCTTTTGGATTGCCAATCCTACAACGTTTCTTGGATGAACGAGAGAAATCTGGAAAGATGTCTGAAGAAAAAGGAGTAGATGCAAAAAGATATGCTCCCAGAAGTCTTCTACGGGCTCTAATTATTACTCCTACTAGAGAACTTGCTCTTCAGGTTACTGATCATCTCAAGGCAGTCGCAGTAGGTACAGATATCAGGGTGGTTCCAATCGTTGGTGGGATGTCCACTGAAAAGCAGGAAAGGCTTTTAAGGATGAGGCCAGAGGTTGTAGTTGGAACTCCAGGACGGTTGTGGGAACTTATGTCAGGAGGAGAGAAGCATCTTGTTGAGTTGCAGACATTGTCTTTCTTTGTGCTGGACGAGGCTGATAGGATGATAGAAAATGGCCACTTTCGTGAGTTGCAGTCCATAATTGATATGCTTCCTGTGACCAATGGTTCTGCAGAAAATTTACAAAATGCAGAAAACTCTTTGACCTCTGCAAGTTCTCAAAGAAAGAAAAGACAAACACTTGTGTTTTCTGCTACATTGTCACTATCTTCTGATTTCCGTAAGAAACTAAAGCGTGGATCATCAAGACCTAATCAATCGGGGATGGATGGTTTGAATTCTATAGAGGCTCTATCTGAGAGAGCTGGGATAAGACCTAATGTTGCTATTATAAATCTGACAAACACGTCGGTCTTGGCAAATAATCTTGAAGAATCATTTATAGAATGCAGGGAAGAAGACAAAGATGCTTATTTGTATTACATTCTATCTGTTTATGGACAAGGCCGCACTATTGTGTTCTGTACATCCATTGCTGCATTACGGCATATTGCTGCTTTATTATCCATTGTTGGTGTTAATGTCTTGACTCTTCATGCTCAAAGGCAGCAACGAGCACGCTTGAAGGCAATTGATCGTTTCCGTGGAAGTCAAAATGGGATACTGATTGCCACTGATGTTGCGGCTAGAGGCCTTGATATTCCTGGTGTTCGAACTGTTGTCCACTATCAACTACCACATTCGGCTGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGATGGATGCAGTATTGCGTTGGTCTCAGCCAATGAAACTTCCAAATTTGCATCTCTATGCAAATCATTCTCTAAGGAAAGCTTCCAGCGATTTCCTGTTGATAATTCATACATGCCAGAGGTTCTAAAACGTTTGTCTCTTGCACGCCAGATTGACAAGATTCTGCGGAAGCATTCCCAGGAGAAGGCAAGTAAAACCTGGTTTGAGCGGAATGCGGAGTTGGTGGAATTAGTTGTGGACAACGATGACAGTGAAGAGGAGAGAGTAAACAATTATAAGCAGAAGAAAGCTGGCTCCATTCAGTTAAAGAAATTGCAGCAGGAGCTCGACAAGCTGCTTTCCCACCCTCTGCAACCAAAATCATTTTCACATCGATATTTGGCTGGTGCTGGGGTTTCACCTCTTCTGCAACATCAATTTGAAGAACTGGCCAAGCAGGATAATGCATCTGTTCAGAATATGGGAGATAACAAAAGGAGGAAGTTGGCTGCTTTTGGTCAAGATCTTACAGAACCACTTCAAGCACTTCGAACTGGTGGTCAACAGGTACATATGGATGCAAAAGAGATGGCTGAAAAACGGAGGAAAATGGAGAACCTTAGGAGAAAGAGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGGAGAAATAAACGGAAACAAATGAAAGGCAAGATTTAG 2088 42.43 MLDNNDVFSIKLLISHLLSAYPLTLKDLFKKLWKFPCPERIKFQKEIRDDVEKDAVDETEYYAWNELRLHPLLMKSIYKLGFKEPTAIQKACIPAAAYQGKDVVGAAETGSGKTLAFGLPILQRFLDEREKSGKMSEEKGVDAKRYAPRSLLRALIITPTRELALQVTDHLKAVAVGTDIRVVPIVGGMSTEKQERLLRMRPEVVVGTPGRLWELMSGGEKHLVELQTLSFFVLDEADRMIENGHFRELQSIIDMLPVTNGSAENLQNAENSLTSASSQRKKRQTLVFSATLSLSSDFRKKLKRGSSRPNQSGMDGLNSIEALSERAGIRPNVAIINLTNTSVLANNLEESFIECREEDKDAYLYYILSVYGQGRTIVFCTSIAALRHIAALLSIVGVNVLTLHAQRQQRARLKAIDRFRGSQNGILIATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASADGCSIALVSANETSKFASLCKSFSKESFQRFPVDNSYMPEVLKRLSLARQIDKILRKHSQEKASKTWFERNAELVELVVDNDDSEEERVNNYKQKKAGSIQLKKLQQELDKLLSHPLQPKSFSHRYLAGAGVSPLLQHQFEELAKQDNASVQNMGDNKRRKLAAFGQDLTEPLQALRTGGQQVHMDAKEMAEKRRKMENLRRKRKEEKKRLRDQRRNKRKQMKGKI 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9727177 9733622 - CrPI670011_06g015090.1 Cre06g1509 500971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1509 695 CDD DEADc_DDX24 73 336 - -
Cre06g1509 695 Gene3D - 337 582 IPR027417 -
Cre06g1509 695 Pfam Helicase conserved C-terminal domain 360 467 IPR001650 -
Cre06g1509 695 SMART ultradead3 81 320 IPR014001 -
Cre06g1509 695 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 515 IPR001650 -
Cre06g1509 695 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 49 693 IPR050079 -
Cre06g1509 695 MobiDBLite consensus disorder prediction 650 695 - -
Cre06g1509 695 Pfam DEAD/DEAH box helicase 86 293 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cre06g1509 695 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 62 90 IPR014014 GO:0003724(InterPro)
Cre06g1509 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 483 IPR027417 -
Cre06g1509 695 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 233 241 IPR000629 -
Cre06g1509 695 SMART helicmild6 387 468 IPR001650 -
Cre06g1509 695 Coils Coil 652 690 - -
Cre06g1509 695 MobiDBLite consensus disorder prediction 666 695 - -
Cre06g1509 695 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 310 IPR014001 -
Cre06g1509 695 CDD SF2_C_DEAD 348 477 - -
Cre06g1509 695 Gene3D - 37 311 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1509 K14805 - - csv:101209958 1181.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1509 Cre-Chr6:9727177 Cre09g1005 Cre-Chr9:10291553 1.50E-52 dispersed
Cre06g1509 Cre-Chr6:9727177 Cre01g1476 Cre-Chr1:27975393 2.90E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g808 Blo01g00306 . . Bda08g00011 . . . Bma05g01262 Cmo08g01023 . . . . . . . . . . . . . . . Cla06g00708 Cam06g0758 Cec06g0764 Cco06g0776 Clacu06g0749 Cmu06g0732 Cre06g1509 . . . . . Csa02g01016 Chy05g00280 . . . . . Bpe05g01117 . . . . . . Cma08g01052 . Car08g00929 . . Cpe17g00224 . . . . . . . . . . . . . . Lsi09g01183 . . Cme05g00630
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011338 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31