Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1524 ATGGCGGCTACAAATTGCTCCCTGACTCTAGCTCAGCTCCTCGGCCCCAATGTCACCAACTCCGGCGCCGCCGCCTCCTTCATTTGCGACCAATTCTCCACCTCCACCAACAACTTTTCCGACACCAAATTCGCCGTCGACACCGTTTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTCGACGCTGCTGCCGGCGGCCTTTTCTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGCACCCCTTCCAACCCCTTCATCGGCCGCCATTTCTTTGGCCTCAAGTCAATCCCTTCCACCGCCGCCGATTACAGCTTCTTTCTCTATCAATGGGCTTTCGCCATCGCTGCCGCCGGTATCACCAGCGGATCAATTGCCGAGCGAACCCAATTTGTTGCCTATTTGATCTACTCCTCCGTTTTGACCGGTTTCGTTTACCCGGTCGTGTCCCATTGGTTCTGGTCTCCAGACGGTTGGGCCAGCCCGTCACGGTCCAACGGTGACCTCTTGTTTGGAACTGGAGTCATAGATTTCGCCGGTTCCGGCGTGGTTCACATGGTCGGTGGAATCGCTGGACTTTGGGGAGCTTTAATAGAAGGACCACGAATCGGCCGGTTCGACAGAAGCGGCAGATCCGTTGCTCTACGAGGCCATAGCGCTACGTTAGTTGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCCTTCACTAAAATCTTAGTTCCGTATGGTTCGAATAATTACTACGGACAGTGGAGTGCCGTCGGTCGAACCGCCGTGACGACGACACTTGCCGGTTGCACGGCTGCGCTAACAACGCTTTTCGGAAAACGAATTCTATCCGGCCACTGGAACGTTACCGACGTCTGCAATGGCTTACTTGGCGGCTTTGCCGCCATAACCTCTGGCTGCTCGGTGGTGGAGCCGTGGGCCGCTGTGATATGTGGGTTTGTGGCGGCGGTGGTTTTAATCAGCTGTAACAAACTGGCAGAGAAGGTGAAATTTGACGACCCATTGGAGGCGGCACAACTGCACGGCGGTTGCGGGGCGTGGGGGATAATTTTCACGGCGTTGTTCGCGACGAAGAAGTATGTGAACGAGGTGTACGGCGGAGATATGGGACGGCCACACGGGCTGTTTATGGGCGGCGGAGGGAAGTTGTTGGGTGCGCATTTGATACAAATTTTGGTGATTGTTGGGTGGGTTAGCGTTACAATGGGGCCGTTGTTTTTTGGGCTACATAAGCTGAAGCTATTAAGAATCTCGCCGGAGGATGAGATGGCCGGAATGGATATGACCAGACACGGTGGATTTGCTTACGTGTACCATGATGAAGATGAATCTCCGACCAATGGAGTTCAAATGAGTAAGATTAAGCCAAGAGAAACAAGTCCAATTGGAAATTAA 1503 54.16 MAATNCSLTLAQLLGPNVTNSGAAASFICDQFSTSTNNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNPFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRSNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSATLVVLGTFMLWFGWYGFNPGSFTKILVPYGSNNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAVVLISCNKLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGDMGRPHGLFMGGGGKLLGAHLIQILVIVGWVSVTMGPLFFGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPTNGVQMSKIKPRETSPIGN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9972519 9974021 - CrPI670011_06g015240.1 Cre06g1524 500986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1524 500 SUPERFAMILY Ammonium transporter 46 453 - -
Cre06g1524 500 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre06g1524 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre06g1524 500 Gene3D Ammonium transporter AmtB like domains 26 491 IPR029020 -
Cre06g1524 500 PANTHER AMMONIUM TRANSPORTER 23 480 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cre06g1524 500 MobiDBLite consensus disorder prediction 478 500 - -
Cre06g1524 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cre06g1524 500 FunFam Ammonium transporter 28 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0470 Cre-Chr5:4257517 Cre06g1524 Cre-Chr6:9972519 2.60E-238 dispersed
Cre06g1524 Cre-Chr6:9972519 Cre11g1455 Cre-Chr11:22013511 1.70E-207 dispersed
Cre06g1524 Cre-Chr6:9972519 Cre07g0507 Cre-Chr7:2853303 2.50E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1524 K03320 - csv:101212168 948.347