Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1543 ATGGCGGCACTTAGTAAATGGCATTCTCTCTCTCTGTTTGCCCTTGCATTGGTGTTCTTCGTAACAATCGCTCTCGTTCGCAAAGAAGAGACCTCTGAAATTAGGACTGTGTTAGCGACGGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGCTGGAAAGTGATGATGTGGAGCAAGAATTCAACAATGAACATGCTGTGGATAATCCTGACGAGATTGCTGCCTCTGTTGAGATGAGTATCCGTAATAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGTTGTGACTCCAATTGGCACCGCAACCGGAAGCGCCTTGCGGAATGTGGCATTGGGTTTGGTCGGAATGCTATTGGTGGACGTGATGGTCGTTTCTATGTCGTAACTGATTCGAGTGACAACGATCCAGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGACATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTTAAGACAATTGATGCTCGAGGGGTAAATGTACATATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGAAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGTCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGACTTGTTGATGCTGTCATGGGCTCAACTGCAATCACAATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGAGAGGGGCTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTATACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCACCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACACCAGAGAGCGAATGGAAGGGGTGGAATTGGAGATCAGAAGGAGATATGTTGTTGAATGGTGCTTATTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCCTGCTAA 1350 46.89 MAALSKWHSLSLFALALVFFVTIALVRKEETSEIRTVLATEFQSSSNSSMATRLESDDVEQEFNNEHAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10356445 10359676 - CrPI670011_06g015430.1 Cre06g1543 501005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1543 449 Gene3D - 100 442 IPR012334 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cre06g1543 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cre06g1543 449 FunFam Pectate lyase 100 442 - -
Cre06g1543 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
Cre06g1543 449 SMART amb_all 175 372 IPR002022 -
Cre06g1543 449 Pfam Pectate lyase 187 364 IPR002022 -
Cre06g1543 449 PANTHER PECTATE LYASE 18-RELATED 17 446 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0742 Cre-Chr3:6296402 Cre06g1543 Cre-Chr6:10356445 4.10E-121 dispersed
Cre05g2309 Cre-Chr5:34642720 Cre06g1543 Cre-Chr6:10356445 4.10E-154 dispersed
Cre05g2625 Cre-Chr5:37313946 Cre06g1543 Cre-Chr6:10356445 3.10E-133 dispersed
Cre06g1543 Cre-Chr6:10356445 Cre08g1690 Cre-Chr8:29305832 4.30E-170 dispersed
Cre01g0510 Cre-Chr1:4395893 Cre06g1543 Cre-Chr6:10356445 1.10E-170 transposed
Cre05g0447 Cre-Chr5:4069326 Cre06g1543 Cre-Chr6:10356445 6.00E-220 wgd
Cre06g1543 Cre-Chr6:10356445 Cre07g0529 Cre-Chr7:3139449 2.70E-196 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1543 K01728 - csv:101217580 883.634