Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1552 ATGGGTGGCGACGGAAAGCTCTTTACATTGGCTGAAGTCTCTCAGCACAATAACCGCAAAGACTGTTGGTTGATCATTAATGCCAAGGTTTACAATGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGACGAGGTGTTGTTGTCTGGCACAGGTAAGGATGCAACTGATGATTTTGAAGATGTGGGTCATAGTGAGAGTGCAAGAGAAATGATGAGCAAATACTACATTGGAGAGATGGACGTGTCGACGATCGCAGAACGGTCGGCATACACAACTCCAAAGCAGCCTCATTACAATGAGGATAAGACGACCGAGTTCATCATCAAGCTCCTCCAGTTCTTGGTTCCTCTCGCAATCTTGGGTTTGGCAGTGGGTATCCGCTTTTACACCAAATCAACCTGA 405 47.16 MGGDGKLFTLAEVSQHNNRKDCWLIINAKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMSKYYIGEMDVSTIAERSAYTTPKQPHYNEDKTTEFIIKLLQFLVPLAILGLAVGIRFYTKST 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10651270 10654885 - CrPI670011_06g015520.1 Cre06g1552 501014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1552 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 86 IPR036400 -
Cre06g1552 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cre06g1552 134 FunFam Cytochrome b5 type B 3 85 - -
Cre06g1552 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Cre06g1552 134 Gene3D - 3 84 IPR036400 -
Cre06g1552 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cre06g1552 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cre06g1552 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cre06g1552 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cre06g1552 134 PANTHER CYTOCHROME B5 6 127 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cre06g1552 134 SMART Cyt_b5_2 8 81 IPR001199 -
Cre06g1552 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1552 K23490 - - csv:101213506 249.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1046 Cre-Chr6:4193297 Cre06g1552 Cre-Chr6:10651270 5.40E-28 dispersed
Cre06g1099 Cre-Chr6:4868051 Cre06g1552 Cre-Chr6:10651270 1.50E-08 dispersed
Cre06g1552 Cre-Chr6:10651270 Cre09g2485 Cre-Chr9:44142096 2.30E-42 dispersed
Cre05g0427 Cre-Chr5:3865275 Cre06g1552 Cre-Chr6:10651270 3.90E-58 wgd
Cre06g1552 Cre-Chr6:10651270 Cre07g0553 Cre-Chr7:3362635 1.30E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
Cre05g0427 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cre09g2485 . 23 138 NADPH P450 reductases AT5G53560 78.4 6.1e-51 197.2
Cre06g1552 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.4e-47 186.0
Cre07g0553 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.9e-44 175.6
Cre05g0427 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.6e-48 186.8
Cre06g1552 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.8e-46 181.8
Cre07g0553 . 2 132 NADPH P450 reductases AT5G48810 62.4 4.0e-45 177.9
Cre09g2485 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.3e-40 162.2
Cre05g0427 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.9e-51 196.8
Cre06g1552 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.9e-47 183.7
Cre07g0553 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.6e-41 165.2
Cre09g2485 . 18 137 NADPH P450 reductases AT2G32720 65.0 9.7e-41 163.3
Cre08g0985 . 1 130 NADPH P450 reductases AT1G26340 54.8 2.9e-37 151.8
Cre04g0607 . 2 281 NADPH P450 reductases AT5G17770 82.1 1.1e-131 466.5
Cre10g1789 . 2 280 NADPH P450 reductases AT5G17770 78.1 8.3e-127 450.3
Cre02g2727 . 526 798 NADPH P450 reductases AT5G17770 73.3 1.0e-116 416.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156