Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1555 ATGTGGATTGTTCGTGGGATTTTTGTGGGATTGATTTTGATGATGATAATATTTGTAAGAGGAAATGAAGGTCAATGTTATAAAAGAGTAGGAGTGAAGAAATTGGCATGGAAGACTGTGGTTGTTGACCAGAATGGCCATGGAAATTTCTCTACCATTCAAGCTGCCATTGATTCTGTTCCTTCTAATAATAGGTTTTGGATCTCCATTCATGTTAACCCTGGTGTTTATAGAGAGAAGGTGAAAATCCCATATGATAAACCATATATCATTTTGAAAGGACAAAGAAAAAGAACAACAAAGGTTGTTTGGGACGACCATCTCACTGTTGCTCAGAGCCCTACTTTCACTTCTTCAGCTGATAATATTGTCGTCAAATCCATCACTTTTGTGAATTCTTACAACTATCCATGGAAGAATGGAAATCCAAGAGTTCCAGCAGTAGCAGCAATGATTACAGGCGACAAGTCGTCTTTCTATAGATGTGGTTTCTATGGAGTTCAGGACACATTATGGGATGATCAAGGACGACATTACTATCATCGTTGCACCATTCAAGGAGCTGTCGACTTTATTTTTGGAGCTGCCCAATCCATTTTTCAGGGGTGTTCAATATCAGTGGTTGGAGAAGCACTTCTTCCATTAGGGTCCACAAGCTTCATAACAGCACAAGGAAGAACCAACCCAAATGATGCAAATGGTTTTGTTTTCAAAGAATGCAAGGTGTTTGGGAGTGGCTCAGCCTTCTTAGGAAGGCCATGGAGAGGCTACTCAAGAGTTATCTTTTACAACTCCAACTTCTCCAACATTATAAACCCTTATGGTTGGGATCCTTGGCATTTTGTTGGTCAAGAGAACCAACTTACGTATGTAGAAAATGGGTGTTACGGACCAGGTGCTGACATGTCGCATCGAGTAAAATGGGAGAAGAAGCTCAATTTGAATGAAATACGACGACTCACTAGCATGAGTTTTATCGACACTGAAGGTTGGATCCAAAACCAACCTTGCCGTCAATCGCTGTTCAAGATCCATCGGACGGTACATTTTTCTTGTACTTCCACTTTCCGAGTTCCTTTTCTTTCAGTTTTGAGTAAATTTCTGATCTGGGATACCCTCGATTCGTTTGCATTTTGA 1137 40.46 MWIVRGIFVGLILMMIIFVRGNEGQCYKRVGVKKLAWKTVVVDQNGHGNFSTIQAAIDSVPSNNRFWISIHVNPGVYREKVKIPYDKPYIILKGQRKRTTKVVWDDHLTVAQSPTFTSSADNIVVKSITFVNSYNYPWKNGNPRVPAVAAMITGDKSSFYRCGFYGVQDTLWDDQGRHYYHRCTIQGAVDFIFGAAQSIFQGCSISVVGEALLPLGSTSFITAQGRTNPNDANGFVFKECKVFGSGSAFLGRPWRGYSRVIFYNSNFSNIINPYGWDPWHFVGQENQLTYVENGCYGPGADMSHRVKWEKKLNLNEIRRLTSMSFIDTEGWIQNQPCRQSLFKIHRTVHFSCTSTFRVPFLSVLSKFLIWDTLDSFAF 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10718690 10725619 + CrPI670011_06g015550.1 Cre06g1555 501017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1555 378 Pfam Pectinesterase 40 328 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre06g1555 378 ProSitePatterns Pectinesterase signature 2. 185 194 IPR033131 -
Cre06g1555 378 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 29 334 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cre06g1555 378 FunFam Pectinesterase 34 336 - -
Cre06g1555 378 SUPERFAMILY Pectin lyase-like 38 334 IPR011050 -
Cre06g1555 378 Gene3D - 35 341 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0806 Cre-Chr5:7115507 Cre06g1555 Cre-Chr6:10718690 9.50E-64 dispersed
Cre06g1555 Cre-Chr6:10718690 Cre10g1313 Cre-Chr10:26444829 1.40E-84 dispersed
Cre06g1555 Cre-Chr6:10718690 Cre08g1439 Cre-Chr8:27342821 1.10E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1555 - - - 0.0