Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1560 ATGGGACTTTGTTCGCCTTTCCTTTGGCTTTCTGCTCTGGTGTTTGTGGTGTCTCCTATTATCCTAGTTCTGAGCTTCCTATTTGTTCATTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCGGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAAGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCACGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1593 45.57 MGLCSPFLWLSALVFVVSPIILVLSFLFVHWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSSTVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10765850 10769026 + CrPI670011_06g015600.1 Cre06g1560 501022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1560 530 ProSiteProfiles ARID domain profile. 85 176 IPR001606 GO:0003677(InterPro)
Cre06g1560 530 MobiDBLite consensus disorder prediction 416 530 - -
Cre06g1560 530 CDD ARID_HMGB9-like 87 172 IPR045303 GO:0003677(InterPro)
Cre06g1560 530 SMART hmgende2 317 386 IPR009071 -
Cre06g1560 530 MobiDBLite consensus disorder prediction 289 325 - -
Cre06g1560 530 SUPERFAMILY ARID-like 82 188 IPR036431 GO:0003677(InterPro)
Cre06g1560 530 Gene3D High mobility group box domain 302 397 IPR036910 -
Cre06g1560 530 SUPERFAMILY HMG-box 311 390 IPR036910 -
Cre06g1560 530 SMART bright_3 86 177 IPR001606 GO:0003677(InterPro)
Cre06g1560 530 FunFam High mobility group B protein 15 79 191 - -
Cre06g1560 530 SMART ARID_2 82 172 - -
Cre06g1560 530 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 63 434 - -
Cre06g1560 530 MobiDBLite consensus disorder prediction 479 502 - -
Cre06g1560 530 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 318 385 IPR009071 -
Cre06g1560 530 FunFam High mobility group B protein 15 300 395 - -
Cre06g1560 530 Coils Coil 443 463 - -
Cre06g1560 530 MobiDBLite consensus disorder prediction 298 312 - -
Cre06g1560 530 Pfam ARID/BRIGHT DNA binding domain 88 172 IPR001606 GO:0003677(InterPro)
Cre06g1560 530 Gene3D - 79 179 IPR036431 GO:0003677(InterPro)
Cre06g1560 530 CDD HMG-box_AtHMGB9-like 318 384 - -
Cre06g1560 530 Coils Coil 367 387 - -
Cre06g1560 530 MobiDBLite consensus disorder prediction 444 464 - -
Cre06g1560 530 Pfam HMG (high mobility group) box 318 385 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1693 Cre-Chr5:28434941 Cre06g1560 Cre-Chr6:10765850 5.50E-74 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53883 PF01388 ARID 2.20E-17 CL0123 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1560 - - - 0.0