Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1560 ATGGGACTTTGTTCGCCTTTCCTTTGGCTTTCTGCTCTGGTGTTTGTGGTGTCTCCTATTATCCTAGTTCTGAGCTTCCTATTTGTTCATTGGTTGATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGCAATTGAAGTGTCTTCAAACTGTGTTCCATACCCACCACCGCAAACAACATATGATGATATCGTAGCCAATCCGAAGATCTTTATGACTTCCTTGGAAAAGCTCCACTCTATCATGGGAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTCAATTTTCCTTCTACGGCCACCAATGCATCTTTTGTGCTGAGGAAGTACTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCACTAATTTCTGATTCTTCTCCATGCCCAAGTGCAGCGACAATTCCTATGCAAGGGATGACCTCTATGTTGCCGCCATCAGATAATCAGGCAGTGTCCCAGCAACCACGGATTACTGAACTTCCAGCAGTTTCTCCGAGTTCGACATCACCGGCAGGAGGGTTTCCAGTGATTGGAGTCATTGACGGAAAATTTGATAGCGGATATCTTGTTACTGTTACTGTTGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCTGAGCAACCTTCTCAGCAGCAAGTTTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCTACCTCCACCGCACCAAATGCTCATCGCCGTCGTCGTCGGAAGAAATCTGAGATTAAGAGAAGGGATCCTGCTCATCCAAAGCCAAACAGAAGCGGCTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCATTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGTGACCTTTGGAATAAACTTAAAGAGTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTGCCCTTACAGCAGCGTCTTCCGGAACCAGACCTGAATATGGTCTATGCTGACAAAAATGAAGAAACCGAGGGCGGTGAGTCTCCTCAAACACCAGATAATGATACAAGCTATGTGGAAGGCGACTCCGGAGAGTATAAAACGGAAGAGAAGGAGGAGGAAGAAGAAGAAGATGAAGAGGAGGACTCGGAAGAAGATGCATCTCCACAAGGAATTGGTAATGTGGACGTTAACGTTTTGGTTGAGGAGGAACAGTGTGAGACGAGAACAGCCGAAGAGGATGTTAGAAAAGATAGTAGCACGGTCGGTGACGATAAAGAAGTTTACGCCGGGGATTCGGTAATGGTGGAGGTGGAGGCAAAGACAGAACCCGAACCAACAACAGCCATTAGAGAAGATTAA 1593 45.57 MGLCSPFLWLSALVFVVSPIILVLSFLFVHWLMIEEERTEAGWGSRKELTMASTSFAGGKQLPAIEVSSNCVPYPPPQTTYDDIVANPKIFMTSLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPLISDSSPCPSAATIPMQGMTSMLPPSDNQAVSQQPRITELPAVSPSSTSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPSQQQVLQPVGAFAKDGATSTAPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNEETEGGESPQTPDNDTSYVEGDSGEYKTEEKEEEEEEDEEEDSEEDASPQGIGNVDVNVLVEEEQCETRTAEEDVRKDSSTVGDDKEVYAGDSVMVEVEAKTEPEPTTAIRED 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10765850 10769026 + CrPI670011_06g015600.1 Cre06g1560 501022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1560 530 ProSiteProfiles ARID domain profile. 85 176 IPR001606 GO:0003677(InterPro)
Cre06g1560 530 MobiDBLite consensus disorder prediction 416 530 - -
Cre06g1560 530 CDD ARID_HMGB9-like 87 172 IPR045303 GO:0003677(InterPro)
Cre06g1560 530 SMART hmgende2 317 386 IPR009071 -
Cre06g1560 530 MobiDBLite consensus disorder prediction 289 325 - -
Cre06g1560 530 SUPERFAMILY ARID-like 82 188 IPR036431 GO:0003677(InterPro)
Cre06g1560 530 Gene3D High mobility group box domain 302 397 IPR036910 -
Cre06g1560 530 SUPERFAMILY HMG-box 311 390 IPR036910 -
Cre06g1560 530 SMART bright_3 86 177 IPR001606 GO:0003677(InterPro)
Cre06g1560 530 FunFam High mobility group B protein 15 79 191 - -
Cre06g1560 530 SMART ARID_2 82 172 - -
Cre06g1560 530 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 63 434 - -
Cre06g1560 530 MobiDBLite consensus disorder prediction 479 502 - -
Cre06g1560 530 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 318 385 IPR009071 -
Cre06g1560 530 FunFam High mobility group B protein 15 300 395 - -
Cre06g1560 530 Coils Coil 443 463 - -
Cre06g1560 530 MobiDBLite consensus disorder prediction 298 312 - -
Cre06g1560 530 Pfam ARID/BRIGHT DNA binding domain 88 172 IPR001606 GO:0003677(InterPro)
Cre06g1560 530 Gene3D - 79 179 IPR036431 GO:0003677(InterPro)
Cre06g1560 530 CDD HMG-box_AtHMGB9-like 318 384 - -
Cre06g1560 530 Coils Coil 367 387 - -
Cre06g1560 530 MobiDBLite consensus disorder prediction 444 464 - -
Cre06g1560 530 Pfam HMG (high mobility group) box 318 385 IPR009071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1560 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1693 Cre-Chr5:28434941 Cre06g1560 Cre-Chr6:10765850 5.50E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1560 . 64 415 ARID Transcription Factor Family AT1G04880 58.4 1.1e-107 387.5
Cre10g0271 . 326 596 ARID Transcription Factor Family AT1G20910 61.4 1.6e-91 333.6
Cre05g1693 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.9e-111 397.9
Cre10g0271 . 305 626 ARID Transcription Factor Family AT1G76510 60.2 1.9e-109 393.3
Cre07g1793 . 1 781 ARID Transcription Factor Family AT3G43240 59.2 9.8e-268 919.8
Cre09g0123 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 3.5e-257 884.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53883 PF01388 ARID 2.20E-17 CL0123 Cre TR