Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1565 ATGGGTCTCTCCCCATTTGCCGTTCTTTTGCTCTCTTCCTTGTTACTTTTAAGGTTTTGTTCGGTTTATGGAAGAATTCCGACCACCATTGAAGGGCCGTTTAAGCCTGTGACTGTCCCGCTTGATAAGAGCTTCCGGGGCTTGGCCGAGGACTTGCCGGAAACTGATCCGAGAGTTCAGAAAAATGGGGGTCAGTTCGCGCCGGAACAGATTTCTGTCTCTCTCTCTGCAGATTATGACTCCGCTTGGATTTCTTGGATAACAGGGGACTTTCAAATTGGAGACAACATTCAACCACTAGATCCTGAAAGAGTTGCGAGTATTGTCATGTATGGGAAGTTCAGAATGCCAATGAATAACCAAGCCGAGGGTTATTCTCTTATCTACAATCAGCTTTATCCCTTTGAAGGTCTCAGGAACTACACTTCTGGAATTATACACCATGTTCGTCTGACGGGATTGGAGCCTGATACTTTGTACCAATATCAGTGTGGAGACCCTTCAGTTGCAGAAGAATTGAGTGATGTATATTATTTCAGAACGATGCCTGTTTCTGGGCCCCAGAGTTATCCTAATAGAATAGCAGTGGTTGGTGATTTGGGTCTTACATACAACACTACATCAACAGTTAATAATATTTTGAGTAACCATCCCGACCTTGTTCTATTGATTGGGGATGTGAGTTATGCCAACTTATATCTTACAAATGGCACTGGCTCTGATTGTTACTCTTGTTCTTTTCCTGAAACTCCTATTCATGAAACTTACCAGCCACGTTGGGATTATTGGGGAAGGTATATGCAGCCTCTAATATCCAAAGTTCCATTGATGGTGGTGGAAGGGAACCATGAAATAGAACTACAAGCTGAAAATCAAACATTTGCAGCTTATAGTTCCCGATTTGCATTCCCATCCAAAGAGAGTAACTCGTCTTCGATATTTTACTACTCTTTCAATGCAGGTGGCATTCATTTTATAATGCTTGGTGCCTACATTTCATATGACAAATCAAGTGATCAATACAAATGGCTAGAGCAAGACCTGGCTAAAGTTGACAGGAAAGTCACTCCATGGTTGATAGCTACATGGCACCCACCCTGGTACAGCACCTACACTGCTCATTATAGAGAAGCAGAGTGCATGAAAGTGGCAATGGAAGACTTGCTCTACAAGTATAAAGTTGACATAGTTTTCAACGGCCATGTTCATGCCTATGAGAGGTCAAATAGAGTATATAACTACACTTTGGATCGTTGTGGTCCTGTCCATATAACAGTAGGCGACGGAGGTAACCGAGAGAAAATGGCAATTGAACATGCTGATGAACCCGGAAACTGTCCAGACCCAGCCTCGACACCGGACGAATACATGGGTGGCTTCTGTGCATTCAATTTCACATCAGGCCCAGCTGAAGGAAAATTCTGCTGGGATCAGCAGCCTGAATATAGTGCATATCGTGAAAGTAGTTTCGGCCATGGCATTTTGGAGGTGAAAAACGAAACTCATGCGTTGTGGACTTGGCATCGAAACCAGGACTCAAGGTACAAACATACAGACATGGAAAACAAGAAGATATGTGACAGTATAATCATGGTTCCTACTTGA 1605 43.18 MGLSPFAVLLLSSLLLLRFCSVYGRIPTTIEGPFKPVTVPLDKSFRGLAEDLPETDPRVQKNGGQFAPEQISVSLSADYDSAWISWITGDFQIGDNIQPLDPERVASIVMYGKFRMPMNNQAEGYSLIYNQLYPFEGLRNYTSGIIHHVRLTGLEPDTLYQYQCGDPSVAEELSDVYYFRTMPVSGPQSYPNRIAVVGDLGLTYNTTSTVNNILSNHPDLVLLIGDVSYANLYLTNGTGSDCYSCSFPETPIHETYQPRWDYWGRYMQPLISKVPLMVVEGNHEIELQAENQTFAAYSSRFAFPSKESNSSSIFYYSFNAGGIHFIMLGAYISYDKSSDQYKWLEQDLAKVDRKVTPWLIATWHPPWYSTYTAHYREAECMKVAMEDLLYKYKVDIVFNGHVHAYERSNRVYNYTLDRCGPVHITVGDGGNREKMAIEHADEPGNCPDPASTPDEYMGGFCAFNFTSGPAEGKFCWDQQPEYSAYRESSFGHGILEVKNETHALWTWHRNQDSRYKHTDMENKKICDSIIMVPT 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10849577 10853888 - CrPI670011_06g015650.1 Cre06g1565 501027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1565 534 CDD MPP_PAPs 188 513 IPR041792 -
Cre06g1565 534 Gene3D - 67 184 - -
Cre06g1565 534 SUPERFAMILY Metallo-dependent phosphatases 193 517 IPR029052 -
Cre06g1565 534 Pfam Iron/zinc purple acid phosphatase-like protein C 471 513 IPR025733 -
Cre06g1565 534 Gene3D - 188 455 IPR029052 -
Cre06g1565 534 Gene3D - 456 527 IPR029052 -
Cre06g1565 534 Pfam Calcineurin-like phosphoesterase 193 405 IPR004843 GO:0016787(InterPro)
Cre06g1565 534 SUPERFAMILY Purple acid phosphatase, N-terminal domain 47 183 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cre06g1565 534 Pfam Purple acid Phosphatase, N-terminal domain 68 181 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cre06g1565 534 PANTHER ACID PHOSPHATASE RELATED 6 518 IPR039331 GO:0003993(InterPro)
Cre06g1565 534 FunFam Purple acid phosphatase 188 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1565 K22390 - - csv:101214711 1013.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0446 Cre-Chr5:4043687 Cre06g1565 Cre-Chr6:10849577 6.50E-187 dispersed
Cre06g1565 Cre-Chr6:10849577 Cre06g2023 Cre-Chr6:27888868 8.20E-67 dispersed
Cre06g1565 Cre-Chr6:10849577 Cre08g1413 Cre-Chr8:27117328 5.50E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g907 . . Bda03g01128 . . . Bma04g01056 . . Cmo17g00102 . . . . . . . . . . . . . . Cla06g00762 Cam06g0811 Cec06g0823 Cco06g0829 Clacu06g0813 Cmu06g0787 Cre06g1565 . . . . . . Chy05g00561 . . . . . . . . . Sed09g0186 . . . Cma17g00099 . Car17g00088 Cpe12g00088 . Bhi12g01497 Tan06g2299 Cmetu05g0011 . Hepe03g0361 . . . . . . . . . Lsi09g01138 . . Cme05g00719
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004148 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 2 2 7 1 1 43