Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g1569 | ATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATCGACATTGCTCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATCACCGGAACTTCACAGGCTGACTGTGCTGTCCTCATTATTGACTCCACCACTGGTGGTTTTGAGGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCACGCTCTTCTTGCTTTCACCCTTGGTGTCAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCTACCACTCCCAAATACTCCAAGGCAAGGTACGACGAAATCGTGAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCTTTCGTTCCCATCTCTGGTTTCGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATCTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATTGGTGGTATTGGAACTGTCCCTGTGGGACGTGTTGAAACTGGTATCCTCAAGCCTGGTATGGTTGTCACCTTCGGACCAACTGGGCTCACCACTGAAGTTAAGTCTGTTGAAATGCACCACGAGTCTCTGCCAGAGGCCTTGCCTGGTGACAATGTCGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCTGCCAACTTCACATCCCAGGTCATCATCATGAACCACCCTGGCCAGATTGGTAACGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTTGCTGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAGCTCGAAAAGGAGCCCAAATTCTTGAAGAACGGTGATGCCGGTATGGTTAAGATGGTTCCGACCAAGCCAATGGTTGTGGAGACCTTCTCCTCATACCCACCATTGGGTCGTTTTGCTGTTCGTGATATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACAGGAGCCAAGGTCACCAAATCCGCTGTCAAGAAGAAATAA | 1200 | 49.83 | MNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 399 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 10875689 | 10877459 | - | CrPI670011_06g015690.1 | Cre06g1569 | 501031 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g1569 | 399 | Pfam | Elongation factor Tu domain 2 | 200 | 265 | IPR004161 | GO:0005525(InterPro) | |
| Cre06g1569 | 399 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 201 | IPR027417 | - | |
| Cre06g1569 | 399 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 278 | 381 | IPR009001 | - | |
| Cre06g1569 | 399 | Pfam | Elongation factor Tu GTP binding domain | 8 | 173 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cre06g1569 | 399 | Gene3D | Translation factors | 275 | 382 | - | - | |
| Cre06g1569 | 399 | Gene3D | - | 1 | 178 | IPR027417 | - | |
| Cre06g1569 | 399 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 1 | 182 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cre06g1569 | 399 | FunFam | Elongation factor 1-alpha | 275 | 382 | - | - | |
| Cre06g1569 | 399 | Pfam | GTP-eEF1A C-terminal domain-like | 279 | 379 | IPR054696 | - | |
| Cre06g1569 | 399 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 13 | 28 | IPR031157 | - | |
| Cre06g1569 | 399 | FunFam | Elongation factor 1-alpha | 1 | 178 | - | - | |
| Cre06g1569 | 399 | CDD | EF1_alpha_II | 182 | 272 | - | - | |
| Cre06g1569 | 399 | CDD | EF1_alpha_III | 275 | 378 | - | - | |
| Cre06g1569 | 399 | NCBIfam | translation elongation factor EF-1 subunit alpha | 3 | 385 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
| Cre06g1569 | 399 | FunFam | Elongation factor 1-alpha | 181 | 268 | - | - | |
| Cre06g1569 | 399 | SUPERFAMILY | Translation proteins | 183 | 273 | IPR009000 | - | |
| Cre06g1569 | 399 | PRINTS | GTP-binding elongation factor signature | 100 | 109 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cre06g1569 | 399 | PRINTS | GTP-binding elongation factor signature | 40 | 50 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cre06g1569 | 399 | PRINTS | GTP-binding elongation factor signature | 56 | 67 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cre06g1569 | 399 | PRINTS | GTP-binding elongation factor signature | 20 | 28 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Cre06g1569 | 399 | CDD | EF1_alpha | 1 | 179 | - | - | |
| Cre06g1569 | 399 | PANTHER | TRANSLATION FACTOR | 1 | 379 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
| Cre06g1569 | 399 | Gene3D | Translation factors | 181 | 268 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre02g2404 | Cre-Chr2:37431991 | Cre06g1569 | Cre-Chr6:10875689 | 5.40E-229 | dispersed | |
| Cre05g1912 | Cre-Chr5:31287889 | Cre06g1569 | Cre-Chr6:10875689 | 4.50E-62 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g1569 | K03231 | - | csv:101215193 | 792.727 |