Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1620 ATGAGGACTGAAAACCGAAAGAGGAAGCTGCGGCTAAGCAAGATCTATTCATTTGCTTGTGGAAAAACATCATTGAGAGATGAAGATCATTCACAAATTGGGAGGCCCGGGTTCTCCCGGGTGGTTTTCTGTAATGATCCTGATTGTTTGGAGGCTGGAATGCGTAATTATGTTAATAATTCCATCAGGTCTACAAAGTATACACCCATCAATTTTTTGCCCAAGTCCTTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTTTACTTCTTGATTGCTGGAATACTAGCCTTCACTCCTCTTGCTCCTTTTACTGCCGTCAGTGCAATTATCCCTCTTATTGCAGTCATTATCGCGACAATGGTTAAAGAAGGTATTGAAGATTGGCGACGACAGGCACAGGATATTGAGGTGAATAATAGAAAGGTTAAGGTTCATCAAGGCAATGGAGTCTTTGAGCTTACTGAATGGAAAACTTTGAGGGTCGGAGATATAGTGAAGGTTGAAAAGGATCAATACTTTCCAGCCGACCTTCTTTTAATTTCATCATGCTATGAGGATGGAATCTGTTACGTAGAAACGATGAACCTTGATGGGGAAACAAATCTGAAGGTAAAGCAAGCATTGGATGCAACTGCATTTGCAAATGAGGATTCTAACTTCCGTGATTTTAAGGCTACAATCAAATGTGAAGACCCAAATGCAAATCTTTATACCTTTGTTGGAAGCATGGACTTTGAAGAGCAACAATATCCACTTTCGCCTCAAAATCTTCTCCTGAGGGACTCCAAACTCCGAAACACAGAATATATATACGGGGTTGTTGTCTTTACTGGTCAAGATTCAAAGGTTATTCAAAATTCTACTGATCCACCTTCCAAGAGAAGCAAAGTTGAGAAGAAGATGGATAAAATCATATATCTGCTGTTAAGCATTCTATTCGTGCTGGCATTTATTGGTTCTATAGTCTTTGGTGTCGTGACTAAAGATGATCTGAAAAATGGGAGGACAAAGAGATGGTATCTTAGACCAGATGATTCTACTATTTTCTTTGATCCCAATAATGCACCAGCTGCTGCAATTTTTCACTTTCTGACTGCACTGATGTTGTATAACTACTTTATCCCTATATCCTTGTATGTGTCTATTGAAATTGTCAAAGTTCTTCAGAGTATCTTCATCAATCAAGACATTCATATGTACTATGAAGAAGCTGACAAACCAGCACATGCCCGCACCTCCAATTTGAATGAGGAACTTGGTCAAGTTGACACTATACTCTCTGACAAGACTGGCACTTTGACCTGTAACTCAATGGAGTTTATCAAGTGTTCTGTGGCTGGAACAGCTTATGGCAGTGATGTCACTGAAACTGAGAGAGCTATGGAAGGCAGAAATAGTATGCCAATGCTTAATGGCAATGGCATTGGAAATATCCATAAGAGCAATGCGGATGCTTCAGATACAAATCCCTCTGTCAAAGGCTTTAATTTTAAGGACAAAAGGATTATGAACGGAAACTGGGTTAATGAACCTCATGCAGATGTCATCCAGAAGTTCTTCCGCCTCCTTGCAACTTGTCATACAGCTATTCCCGATGTGGATGAAAACACGGGAAAGGTTTCATATGAAGCTGAATCGCCAGATGAAGCAGCATTTGTAATTGCTGCCAGAGAAATTGGTTTTGAATTCTACCAGAGGACACAGACAAGTATATCTATTCGTGAATTGGATCCTAGGTCTGGAAGGAAGGTCAAAAGGTCATATAAGCTTTTAAATGTTTTGGAGTTTAATAGCGCCCGAAAGAGGATGTCTGTCATAATTAGAGATGAAGAAGGGAAAGTGCTATTACTATGCAAAGGTGCTGACAGCGTCATGTTTGAGAGGCTTGTGAAGAATGCTAGAGAATTTGAAGAGAAAACGAAGGAGCATATCAATGAATATGCCGATGCAGGTCTACGGACCTTGTTACTTGCTTATCGTGAACTTGATGAGGAGGAATACAAGGAATTTGATAGGAAATTCTCTGAAGCAAAGAATTCAGTTAGTGCAGAGAGGGAGGCAATGATTGATAAAGTAACAGATCGCATTGAGAGGAACTTAATTCTTCTTGGTTCCACAGCAGTTGAGGACAAGCTTCAAAATGGGGTCCCTGAATGCATAGACAAACTTGCTCAAGCTGGGATTAAGATCTGGGTTTTGACTGGGGACAAGATGGAGACTGCGATCAATATTGGTTTTGCCTGTAGTTTGCTGAGACAAGGAATGAAACAGATCATTATATCTCTGGAGACACCAGAAATTCAAGCCTTAGAAAGGACGGGAGAGAAGGATATGATCACTAAGGCATCAAAAGAAAGTATCGTCCACAAGATAAAGCGGGCAAGATCTCAGATCACTGCATCAAGTGGAAGCTCTGAGGCTTATGCATTGATAATTGATGGGAAATCACTTACTTATGCTCTAGAGGATGATGTGAAGGATGCATTCCTTGACCTTGCAATTGGATGTGCGTCTGTTATTTGTTGTCGCTCATCTCCAAAGCAAAAGGCAATGGTCACTAAGTTGGTTAAACTTGCAACGGGGAAAACAACATTAGCAATTGGTGATGGTGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGTGTTGGAATCAGTGGTGCCGAAGGGATGCAGGCAGTCATGTCGAGTGATATTGCAATTGCTCAGTTCAGATATTTGGAGCGTCTTCTGCTTGTGCATGGACATTGGTGTTACAGGAGATTATCATCAATGATTTGCTACTTTTTCTACAAGAATTTCACATTTGGTTTTACGCTTTTCTTATATGAGGCATACACTTCGTTCTCTGGACAACCTGCATATAATGACTGGTTTATGTCACTCTACAACGTTGTGTTCTCGTCTCTGCCAGTTGTGGCCCTCGGGGTGTTTGACCAAGACGTGTCTGCAAGATACTGCCTTAAGTTTCCTATGTTGTACCAACAAGGTGTGCAGAACGTCCTCTTCAGCTGGGTTAGGATACTTGGCTGGATGTTTAATGGTCTTTGTAGTGCAGTGATCATTTTCTTTTTCTGCACAAGTGGAATGCAGCATCAAGCGTTTAATTCCGAGGGGAAAACCGTGGGGAGGGATATTCTAGGAGCGACGATGCTGTCATGTGTTATTTGGGTTGTCAACTTGCAGATGGCTCTCTCTGTTAGCTACTTCACTTTGCATTTCGACAACTGCATATCGCGTGTTCCTCGAAGCCCTTGCTCCTGCCGGGTCTTATTGGCTTCTGCTGATATTTGTGGTGATCTCTACTCTCATTCCATTCTTTGTATACTCAGCATTACAGTTGAATTTCTTTCCCATGCAAAGCTCATTGAGACCAACAACTGTGGGCTTCACTGCTCGTTTGGCAGCCAAAATAAGAAGAGAAAAATCATAGAACCTGAAATTGAATCACCATTTCCCCAAAAGCTTCCAAAGCCAAACTCTCCCTTCTCATGCAAATCTTGCATAACCTTCTCAATCTCTTCCATACAACAACTCAACCCCAACTCATTTTCTTCACTTCTCATACATCTTCCCTTACTATTTCCTTTAAGCTCATCTCTCTTACCGCCCTTTTCTTTCCCTACCATCTTTTCCTCTTTTTCTCTCATTCTTAGCCTTCTCTTCGCAAATTCTCTCGTCTTTCGAACGAGTTTCCATGGAAGCTTGAGTAACAAAAGGAGAATGATCTGCAACGCCAAGCATTGGCAGCAACAGCATATGACAATGCAGTCGGCCGCTAGTGTGTTCATATCTTCCATGGTGGCGGAAAATGGTTGA 3822 41.44 MRTENRKRKLRLSKIYSFACGKTSLRDEDHSQIGRPGFSRVVFCNDPDCLEAGMRNYVNNSIRSTKYTPINFLPKSLFEQFRRVANFYFLIAGILAFTPLAPFTAVSAIIPLIAVIIATMVKEGIEDWRRQAQDIEVNNRKVKVHQGNGVFELTEWKTLRVGDIVKVEKDQYFPADLLLISSCYEDGICYVETMNLDGETNLKVKQALDATAFANEDSNFRDFKATIKCEDPNANLYTFVGSMDFEEQQYPLSPQNLLLRDSKLRNTEYIYGVVVFTGQDSKVIQNSTDPPSKRSKVEKKMDKIIYLLLSILFVLAFIGSIVFGVVTKDDLKNGRTKRWYLRPDDSTIFFDPNNAPAAAIFHFLTALMLYNYFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGTAYGSDVTETERAMEGRNSMPMLNGNGIGNIHKSNADASDTNPSVKGFNFKDKRIMNGNWVNEPHADVIQKFFRLLATCHTAIPDVDENTGKVSYEAESPDEAAFVIAAREIGFEFYQRTQTSISIRELDPRSGRKVKRSYKLLNVLEFNSARKRMSVIIRDEEGKVLLLCKGADSVMFERLVKNAREFEEKTKEHINEYADAGLRTLLLAYRELDEEEYKEFDRKFSEAKNSVSAEREAMIDKVTDRIERNLILLGSTAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIISLETPEIQALERTGEKDMITKASKESIVHKIKRARSQITASSGSSEAYALIIDGKSLTYALEDDVKDAFLDLAIGCASVICCRSSPKQKAMVTKLVKLATGKTTLAIGDGANDVGMLQEADIGVGISGAEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRLSSMICYFFYKNFTFGFTLFLYEAYTSFSGQPAYNDWFMSLYNVVFSSLPVVALGVFDQDVSARYCLKFPMLYQQGVQNVLFSWVRILGWMFNGLCSAVIIFFFCTSGMQHQAFNSEGKTVGRDILGATMLSCVIWVVNLQMALSVSYFTLHFDNCISRVPRSPCSCRVLLASADICGDLYSHSILCILSITVEFLSHAKLIETNNCGLHCSFGSQNKKRKIIEPEIESPFPQKLPKPNSPFSCKSCITFSISSIQQLNPNSFSSLLIHLPLLFPLSSSLLPPFSFPTIFSSFSLILSLLFANSLVFRTSFHGSLSNKRRMICNAKHWQQQHMTMQSAASVFISSMVAENG 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12021976 12029872 - CrPI670011_06g016200.1 Cre06g1620 501082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1620 1273 FunFam Phospholipid-transporting ATPase 545 703 - -
Cre06g1620 1273 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Cre06g1620 1273 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 28 1074 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Cre06g1620 1273 FunFam Phospholipid-transporting ATPase 703 907 - -
Cre06g1620 1273 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1073 IPR032630 -
Cre06g1620 1273 Pfam Cation transport ATPase (P-type) 525 628 - -
Cre06g1620 1273 Pfam E1-E2 ATPase 138 328 - -
Cre06g1620 1273 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cre06g1620 1273 Coils Coil 626 646 - -
Cre06g1620 1273 SUPERFAMILY Calcium ATPase, transmembrane domain M 56 1074 IPR023298 -
Cre06g1620 1273 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 433 670 IPR023299 GO:0000166(InterPro)
Cre06g1620 1273 NCBIfam HAD-IC family P-type ATPase 360 457 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre06g1620 1273 NCBIfam HAD-IC family P-type ATPase 833 949 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre06g1620 1273 CDD P-type_ATPase_APLT_Dnf-like 59 1027 - -
Cre06g1620 1273 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Cre06g1620 1273 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Cre06g1620 1273 SFLD C1.7: P-type atpase like 408 918 - -
Cre06g1620 1273 Gene3D - 550 677 IPR023299 GO:0000166(InterPro)
Cre06g1620 1273 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Cre06g1620 1273 Gene3D - 114 288 - -
Cre06g1620 1273 NCBIfam phospholipid-translocating P-type ATPase 57 1073 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cre06g1620 1273 Gene3D - 436 463 IPR023299 GO:0000166(InterPro)
Cre06g1620 1273 SFLD p-type atpase 408 918 IPR044492 -
Cre06g1620 1273 Gene3D - 423 435 IPR023214 -
Cre06g1620 1273 FunFam Phospholipid-transporting ATPase 118 288 - -
Cre06g1620 1273 SUPERFAMILY HAD-like 421 922 IPR036412 -
Cre06g1620 1273 Gene3D - 699 907 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1478 Cre-Chr1:28008103 Cre06g1620 Cre-Chr6:12021976 0.00E+00 dispersed
Cre06g1620 Cre-Chr6:12021976 Cre09g0069 Cre-Chr9:948237 0.00E+00 dispersed
Cre06g1620 Cre-Chr6:12021976 Cre05g2493 Cre-Chr5:36334045 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1620 K01530 - csv:101205800 2046.55