Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1669 ATGTCGTCTCCGGCTCCGACCTCGCCGCCGGCCACTAACACGACCTCACCCCCACCTCCCACCACCACCGCACCACCCCCAGCACCTCCGTCTCTCTCACCGCCGCCTCCCGACGCTTCCTCTCAGCCTCCACCTGCTTCATCTCCGCCGCCTTCCACCACTCCTTCGCCGCCCCCTCCGGACACTACCACTCCATCTCCGCCTACTTCTTCTCCTTCACCGCCAACCACGCCTTCGAGCTCTTCGCCGCCGCCGCCGCCTCCTCCTCCGTCTACCAACTCGACTGCTCCCCCGCAGCTGCCGAGTCCGACGCCGCCCTCGGCTTCTGGCACACCTGCGAGTCCCGGAGCAAATCTGTCTCCGCCGTCTTCCTCACCATCGTCCGGTAATTCTGCCGGACTTGTAGCTGGAGTTGCTGTTGCTGGAGTGGTGGTAGTGGTTGTGGCGTTGATTGTAATGTTTTTGTGTTTAAGAAAGAAAAGAAGACGCGACGAGGAGGCTTACTACCGGCCCCCCCCGCCCGCGGCGTTTAAAGATGGCCCATATGGTCCACAACAGCACCACTGGCAATCACATCCCCCGCCGCCGCCGCCGTCAGATCATTTCGTGGGGGCAGTGCTGAAGCCGTCTCCTCCGCCAGCATCACGGCCACCGCTCTCACCTCCGATTATAAACAGCAGTGGAGGCTCTGGATCTAATTATTCAGGGTCTGAAAATTCGCTTGCTCCTGCTCCATCTTCAATTCCCTTGGGCTTCTCACAAAGCAGCTTCACTTATGAAGAGTTAGCAATGGCGACAGATGGGTTTTCAGAAGCCAACCTCCTCGGACAAGGTGGGTTTGGTTATGTTCATAAAGGAGTACTTCCAAATGGAAAGGAAGTGGCAGTGAAGCAACTTAAAGCTGGAAGTGGACAGGGAGAGCGTGAATTTCAAGCAGAAGTGGAAATAATCAGCCGAGTTCATCATAGACATCTTGTTTCCTTAGTGGGATATTGCATTACTGGCTCCAAAAGATTGCTGGTTTATGAATTTGTTCCCAACAACACATTGGAGTTCCACTTGCATGGGGAAGGACGACCCACCATGGACTGGCCAACGAGACTGAAAATTGCTTTGGGATCTGCCAAGGGATTAGCCTACCTTCATGAGGACTGTAATCCCAAGATTATTCATCGTGACATCAAAGCAGCAAATATACTTTTGGATCTCAAATTCGAAGCAAAGGTTGCAGATTTTGGGCTTGCTAAGTTGTCTTCTGATGTTAATACTCATGTTTCAACCCGAGTCATGGGAACTTTTGGATACCTTGCTCCTGAATATGCTTCAAGTGGGAAACTCACTGAGAAATCAGATGTCTTCTCCTTTGGAGTGATGCTTTTGGAGATGATTACTGGACGCAGACCTGTAGATACAACTCAATCATTCATGGACGATGGATTGCTTGATTGGGCAAGGCCATTACTGTTACGGGCCACCGAAGATGGGGTGTATGACGGTCTAGTAGATCCAAAGCTGAGAGATAACTATGACCACAACGAGATGGCTCGCATGGTTGCTTGCGCGGCCGCCTGTGTGCGCCATTCAGCAAGGCGCCGACCACGGATGAGTCAAGTGGTTCATGCTCTTGAAGGTGAAGCCTCACTTTCTGATCTTAATGAAGGGATTCGACCTGGACATAGCTCTGTCTACAGTTCTTATGGAAGCTCTGACTACGACACAGCTCAGTACAATGAGGACCTGAAAAAGTTCAGGAAGATGGCGTTGGCGAGTCAGGAGTACGGCAGTGAGTACAGCGAGCCAACGAGTGAGTATGGTTTGTATCCATCTGGGTCGAGTGGCGATGGCCAAACAACCAGGGAAATGGAGATGAGAACGATGAAGAAAGAAAGTGGAGGTTTTAATGGAAGCTCATAA 1914 52.14 MSSPAPTSPPATNTTSPPPPTTTAPPPAPPSLSPPPPDASSQPPPASSPPPSTTPSPPPPDTTTPSPPTSSPSPPTTPSSSSPPPPPPPPSTNSTAPPQLPSPTPPSASGTPASPGANLSPPSSSPSSGNSAGLVAGVAVAGVVVVVVALIVMFLCLRKKRRRDEEAYYRPPPPAAFKDGPYGPQQHHWQSHPPPPPPSDHFVGAVLKPSPPPASRPPLSPPIINSSGGSGSNYSGSENSLAPAPSSIPLGFSQSSFTYEELAMATDGFSEANLLGQGGFGYVHKGVLPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHRHLVSLVGYCITGSKRLLVYEFVPNNTLEFHLHGEGRPTMDWPTRLKIALGSAKGLAYLHEDCNPKIIHRDIKAANILLDLKFEAKVADFGLAKLSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEMITGRRPVDTTQSFMDDGLLDWARPLLLRATEDGVYDGLVDPKLRDNYDHNEMARMVACAAACVRHSARRRPRMSQVVHALEGEASLSDLNEGIRPGHSSVYSSYGSSDYDTAQYNEDLKKFRKMALASQEYGSEYSEPTSEYGLYPSGSSGDGQTTREMEMRTMKKESGGFNGSS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13440115 13442685 + CrPI670011_06g016690.1 Cre06g1669 501131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1669 637 MobiDBLite consensus disorder prediction 111 131 - -
Cre06g1669 637 MobiDBLite consensus disorder prediction 594 637 - -
Cre06g1669 637 MobiDBLite consensus disorder prediction 221 240 - -
Cre06g1669 637 SUPERFAMILY Protein kinase-like (PK-like) 244 542 IPR011009 -
Cre06g1669 637 MobiDBLite consensus disorder prediction 594 619 - -
Cre06g1669 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 389 401 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1669 637 FunFam proline-rich receptor-like protein kinase PERK1 247 344 - -
Cre06g1669 637 SMART serkin_6 269 518 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1669 637 FunFam Proline-rich receptor-like protein kinase PERK1 345 553 - -
Cre06g1669 637 MobiDBLite consensus disorder prediction 1 131 - -
Cre06g1669 637 Pfam Protein tyrosine and serine/threonine kinase 273 542 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1669 637 Gene3D Phosphorylase Kinase; domain 1 244 344 - -
Cre06g1669 637 ProSitePatterns Protein kinases ATP-binding region signature. 275 297 IPR017441 GO:0005524(InterPro)
Cre06g1669 637 PRINTS Proline rich extensin signature 4 20 - -
Cre06g1669 637 PRINTS Proline rich extensin signature 47 72 - -
Cre06g1669 637 PRINTS Proline rich extensin signature 26 43 - -
Cre06g1669 637 MobiDBLite consensus disorder prediction 188 202 - -
Cre06g1669 637 ProSiteProfiles Protein kinase domain profile. 269 548 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1669 637 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 94 586 IPR047117 -
Cre06g1669 637 MobiDBLite consensus disorder prediction 1 110 - -
Cre06g1669 637 MobiDBLite consensus disorder prediction 165 240 - -
Cre06g1669 637 Gene3D Transferase(Phosphotransferase) domain 1 345 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1669 Cre-Chr6:13440115 Cre11g0934 Cre-Chr11:6612529 2.40E-158 dispersed
Cre03g0710 Cre-Chr3:5972119 Cre06g1669 Cre-Chr6:13440115 1.30E-55 transposed
Cre11g0731 Cre-Chr11:4424489 Cre06g1669 Cre-Chr6:13440115 4.80E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64214 PF07714 PK_Tyr_Ser-Thr 2.70E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1669 - - - 0.0