Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1688 ATGATTCTCAATCTTATGAACAAGGAGATGAGTGATAGTGAATTGCTCGAGGATTTGGATGAGTGGACCAATCTCACCGTTGAATATTTGGAAAAGATTGAAATTCAAAATCTCGAGAGGGAGAGAAACGAAGAACCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGTAGGGAATCGAGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCTCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTGTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAACGTCTTCAGGCACATCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCGGGACCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATAAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCAAAGTGATAGGAGTGTACACGATAATTCCAATTCAGATAGTTCGGATATTACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTTTGCTTCCTGAGACTGGTCTGTTCAAGTTAGTTGGTTGTCTCATTTTAACGTATATCATTCGTTCTTATATCATCATTAGAATTCTAGGCGAATTTTGTGTTCCAAATTTCAATCGTAGATAG 2085 43.5 MILNLMNKEMSDSELLEDLDEWTNLTVEYLEKIEIQNLERERNEEPLGVVSFSFPSRRLSSSIKVLVISVGNREMDNLPPLNAQTDSAEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKACHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVTSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDKSQHQKAEEKAADGECGSSNQSDRSVHDNSNSDSSDITRARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSLLPETGLFKLVGCLILTYIIRSYIIIRILGEFCVPNFNRR 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13797090 13804333 - CrPI670011_06g016880.1 Cre06g1688 501150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1688 694 MobiDBLite consensus disorder prediction 455 471 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 165 182 - -
Cre06g1688 694 ProSiteProfiles CRC domain profile. 188 312 IPR005172 -
Cre06g1688 694 MobiDBLite consensus disorder prediction 375 407 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 486 512 - -
Cre06g1688 694 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 275 309 IPR005172 -
Cre06g1688 694 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 189 224 IPR005172 -
Cre06g1688 694 SMART CXC_2 187 227 IPR033467 -
Cre06g1688 694 SMART CXC_2 272 313 IPR033467 -
Cre06g1688 694 PANTHER TESMIN/TSO1-RELATED 118 587 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre06g1688 694 MobiDBLite consensus disorder prediction 161 182 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 375 399 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 451 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1688 Cre-Chr6:13797090 Cre08g1257 Cre-Chr8:25774642 1.80E-26 dispersed
Cre05g0606 Cre-Chr5:5398593 Cre06g1688 Cre-Chr6:13797090 2.00E-29 transposed
Cre06g1386 Cre-Chr6:8035837 Cre06g1688 Cre-Chr6:13797090 7.60E-32 transposed
Cre07g1642 Cre-Chr7:31849168 Cre06g1688 Cre-Chr6:13797090 4.00E-14 transposed
Cre11g0724 Cre-Chr11:4368939 Cre06g1688 Cre-Chr6:13797090 6.80E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53890 PF03638 TCR 3.80E-12 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1688 - - - 0.0