Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1688 ATGATTCTCAATCTTATGAACAAGGAGATGAGTGATAGTGAATTGCTCGAGGATTTGGATGAGTGGACCAATCTCACCGTTGAATATTTGGAAAAGATTGAAATTCAAAATCTCGAGAGGGAGAGAAACGAAGAACCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCTTCGAGCATCAAAGTGCTTGTGATTTCAGTAGGGAATCGAGAGATGGATAATTTACCCCCGCTAAATGCTCAAACTGATAGTGCGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAAAGACTAGCTAGGCAGCTGGATTTTACGGGGTTTGGTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCCGTGTCAACAATCAGAGTCACCGGCCGTCATGGTGGTGCAGAGTCAGTCTCAGCCACAGTCCCCACAACATTTGACGGTTTTGCCCATTGTAACAAAAGCGTGTCATCCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAGTGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGCTTTGCATCTGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAAATTGCTAGCAGCCCACATGGAACACTAGAGAGCAGGGATGAGATTGGAGAAGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGCAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAGGCTCTTTTCCATGGTGACCATGCCAACAACTTGGCTTATATTCAACAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGTCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCCCTCAACAGCATACCACAATTTCATCAGGCAAATAATGTAACGTCTTCAGGCACATCTACTTCATCTCCCTTCCCAGTTGCTCATGTTGGCAATGGCAGCCCTGCAGCATCGGGACCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAACCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTTTCAAGTGAAGTTGCCAAGAAAATAGCAGAACAAAGAAATGCTGAGAAACAGATAAATGACCCACCACAGATTTCTCGTGCTTCATCTACTGTTGATAAGTCACAGCATCAGAAGGCCGAAGAGAAAGCTGCAGATGGCGAGTGTGGAAGTTCAAACCAAAGTGATAGGAGTGTACACGATAATTCCAATTCAGATAGTTCGGATATTACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAACGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTCGGCAGGCCATGATTGCAACACATCATCACATATGCCTGATAAGTCTGTGTCAGAAGTCTACATCGAGCAAGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAAGTGGGGAATGAAAATCTCAGCAACAATTTCACCTCAAATAATGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTCGCTCTCTCGGCACACAGAATACCGCCAGTCGGCGCTGCAGCTCGTCATCCGAATAACGATCTCCTACTCAAAATTCTACCACTTCCTAAAAATAGTTTGCTTCCTGAGACTGGTCTGTTCAAGTTAGTTGGTTGTCTCATTTTAACGTATATCATTCGTTCTTATATCATCATTAGAATTCTAGGCGAATTTTGTGTTCCAAATTTCAATCGTAGATAG 2085 43.5 MILNLMNKEMSDSELLEDLDEWTNLTVEYLEKIEIQNLERERNEEPLGVVSFSFPSRRLSSSIKVLVISVGNREMDNLPPLNAQTDSAEPGNVVSSDVPAKRLARQLDFTGFGGAVLPEHPHFQSQPPCQQSESPAVMVVQSQSQPQSPQHLTVLPIVTKACHPARKPDSPKSRSRSSVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTLESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNLAYIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSIPQFHQANNVTSSGTSTSSPFPVAHVGNGSPAASGPSKFSFRSLLADLIQPHDLKELCSVLVVFSSEVAKKIAEQRNAEKQINDPPQISRASSTVDKSQHQKAEEKAADGECGSSNQSDRSVHDNSNSDSSDITRARPMSPGTLALMCDERDTMFMGAGLADGSAGHDCNTSSHMPDKSVSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSEVGNENLSNNFTSNNGCQQRSISNGVVKNVALSAHRIPPVGAAARHPNNDLLLKILPLPKNSLLPETGLFKLVGCLILTYIIRSYIIIRILGEFCVPNFNRR 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 13797090 13804333 - CrPI670011_06g016880.1 Cre06g1688 501150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1688 694 MobiDBLite consensus disorder prediction 455 471 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 165 182 - -
Cre06g1688 694 ProSiteProfiles CRC domain profile. 188 312 IPR005172 -
Cre06g1688 694 MobiDBLite consensus disorder prediction 375 407 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 486 512 - -
Cre06g1688 694 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 275 309 IPR005172 -
Cre06g1688 694 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 189 224 IPR005172 -
Cre06g1688 694 SMART CXC_2 187 227 IPR033467 -
Cre06g1688 694 SMART CXC_2 272 313 IPR033467 -
Cre06g1688 694 PANTHER TESMIN/TSO1-RELATED 118 587 IPR028307 GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cre06g1688 694 MobiDBLite consensus disorder prediction 161 182 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 375 399 - -
Cre06g1688 694 MobiDBLite consensus disorder prediction 451 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1688 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1688 Cre-Chr6:13797090 Cre08g1257 Cre-Chr8:25774642 1.80E-26 dispersed
Cre05g0606 Cre-Chr5:5398593 Cre06g1688 Cre-Chr6:13797090 2.00E-29 transposed
Cre06g1386 Cre-Chr6:8035837 Cre06g1688 Cre-Chr6:13797090 7.60E-32 transposed
Cre07g1642 Cre-Chr7:31849168 Cre06g1688 Cre-Chr6:13797090 4.00E-14 transposed
Cre11g0724 Cre-Chr11:4368939 Cre06g1688 Cre-Chr6:13797090 6.80E-171 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1257 . 314 439 CPP Transcription Factor Family AT3G22780 57.1 2.1e-38 157.9
Cre08g1257 . 286 439 CPP Transcription Factor Family AT4G14770 51.3 4.7e-40 163.3
Cre11g0724 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 6.1e-142 501.5
Cre06g1688 . 104 618 CPP Transcription Factor Family AT2G20110 50.5 6.1e-126 448.4
Cre08g1257 . 314 448 CPP Transcription Factor Family AT3G04850 52.2 4.8e-37 153.3
Cre11g0724 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 1.6e-151 533.5
Cre06g1688 . 94 617 CPP Transcription Factor Family AT4G29000 53.3 4.2e-144 508.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53890 PF03638 TCR 3.80E-12 No_clan Cre TF