Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1709 ATGATCCGGTTAAGTTTGATTGTTTTTTTCCTCTTTTCCGTGTTCTTTGTTGTTGAAGCTCAAATTGATTCTCAAGATCCTGAAAATGCTGCTTTTCAACCAAGTCTTGGCTTTGTGATAGGGATTTTGGGAGTTATGTTTTTGTTGACATTTATTCTTCTTGTCTATGCAAAGTTCTGCCATAGAAGATCTTCTGTTCGTGGGGATGATGTAAATCTTCCTAGACAAATCAGGTCAAGTTCTCGGCTTTCTGGAGTCGATAAGACGGTGATCGAGTCTCTTCCATTCTTTAGATTCTCCACATTGAAAGGGTCCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTCCGGTTGTTGCCGAAGTGCAAACATGCATTTCATATTAACTGCATTGATCATTGGCTTGAAAAACATGCTAGCTGTCCTCTTTGCAGGCAAAGAGTTGGCTCTGAGGACTTGAAGCTCCTTGCTACTTCAAACAGCATGAGGTTCTTATTGAGCAACTTATCAGAGCTGAAACAAGACTCAAACATAGAGCTCTTTGTACAAAGAGAAGAAGAAGAACAACGACAAATACTCCATGGCTCTTCTAGATTCAGCATTGGAAGAAGCTTCAGAAAGATCTTAAGGATTGATAAGGAAGAGGAAATGTTGATACAAAAGGCTTGTGGTGATGGAGATGAGGACATGAAGAACTTACACAGACACAACCACAAAATTATCGTATCCGATTTCGTTTTCATGAATCGATGGAGCAACGTAAGTTCGTCAGACCTGATGTTCTTGAACAAAGAGATGATGGATGCCATTTCAAGCAGTAGATTCACTTCCTTGGAAACAGATATAGAACAGTCAACGCAGCCAAGATCAATACAAATTGAAGAAATTTTGAAGATCAAGGAGGAGATGGAAATAAAGAGATCATTTGAGAGCAAACTCAACACAATAAACCAAAGCAACTCAGTTCTGGGATTCCCTTCTACATCACAATCTGCTGCAAATCCAAGTCAAACAACAAGAATTACAAGCCCAGATGCAAGAAGATCAGTTTCAGAAATCACAGGCATATCAAGATTTGGTAACGAAGATCTATATATGAATTTTAACAGAAAAGTTGAAACTGGGGAATCTTCTGATCTGGGAAACAATGTAAAGCAAGAAAGAGTGAGACAAATTTGGTACCCAATTGCTAAAAGAACAGTCCAATGGTTTGCCAATAGAGAAACAAGGTTTCAAACAGCTGACAACAGACAACAAACAGTAGAAAATGTATAA 1299 38.57 MIRLSLIVFFLFSVFFVVEAQIDSQDPENAAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRSSVRGDDVNLPRQIRSSSRLSGVDKTVIESLPFFRFSTLKGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHASCPLCRQRVGSEDLKLLATSNSMRFLLSNLSELKQDSNIELFVQREEEEQRQILHGSSRFSIGRSFRKILRIDKEEEMLIQKACGDGDEDMKNLHRHNHKIIVSDFVFMNRWSNVSSSDLMFLNKEMMDAISSSRFTSLETDIEQSTQPRSIQIEEILKIKEEMEIKRSFESKLNTINQSNSVLGFPSTSQSAANPSQTTRITSPDARRSVSEITGISRFGNEDLYMNFNRKVETGESSDLGNNVKQERVRQIWYPIAKRTVQWFANRETRFQTADNRQQTVENV 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14445970 14447268 - CrPI670011_06g017090.1 Cre06g1709 501171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1709 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 161 IPR013083 -
Cre06g1709 432 Pfam Ring finger domain 110 153 IPR001841 -
Cre06g1709 432 FunFam RING-H2 finger protein ATL43 86 160 - -
Cre06g1709 432 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Cre06g1709 432 SMART ring_2 111 152 IPR001841 -
Cre06g1709 432 CDD RING-H2_EL5-like 110 153 - -
Cre06g1709 432 SUPERFAMILY RING/U-box 91 157 - -
Cre06g1709 432 MobiDBLite consensus disorder prediction 334 355 - -
Cre06g1709 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1709 Cre-Chr6:14445970 Cre06g2263 Cre-Chr6:30529938 3.30E-42 dispersed
Cre06g1709 Cre-Chr6:14445970 Cre06g1710 Cre-Chr6:14448467 9.50E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1709 K10664 - csv:105436309 517.309