Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1719 ATGGAGACTGAGTCTAGAATTTTAAACCCATCTCCGCCGCCGTCGCCGTCATCATCTGGAAGTTTATCCACGGTTCCCGATCATCACCCGTCGTCGTCGTCGTCGGCGGTCGAGTCGAACCGGAAACGAGCGAAACGGCCGAGAGAAAATAACAACAACAATAGTAAACACCCGGTTTTCCGTGGGGTCCGAATGAGGGCTTGGGGAAAGTGGGTTTCCGAAATTCGTGAACCCCGAAAAAAAAGCCGGATCTGGCTCGGCACTTTCTCCACCCCTGAAATGGCCGCACGTGCTCACGACGTCGCCGCCCTCACCATTAAAGGCACCGCCGCCATTCTCAACTTCCCTGAACTCGCCCATCACTTCCCCCGCCCCGCCTCCTCCTCCCCCCGCGACGTTCAGGCCGCCGCCGCCAAAGCCGCCGCCATGGAAATCCCAACTCCCTCACTTTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCGCCTTGTGTCCATCCTCGCCTGAGGAACTGAGTGAAATCGTGGAACTCCCGAGTTTAGGAACGAGTTACGAAACAGCCGAGTTAGGGAACGAGTTCGTATTCGTGGACTCAGTGGAAGGCTGGCTTTATTCTTACCCATGGTATAACAGAGTCAATAATGCAGATCACCAAGTACAAGAGGATTATGGATTCTTCAAAGAACAGATTTTAATGGCGGATTATACAGACACTTTAATTCCATCTTCAACTTTCGAAGCTTTCTTATGGCAAAATTAA 777 52.77 METESRILNPSPPPSPSSSGSLSTVPDHHPSSSSSAVESNRKRAKRPRENNNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTAAILNFPELAHHFPRPASSSPRDVQAAAAKAAAMEIPTPSLSSSSSSSSSSSSSSSSSALCPSSPEELSEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVNNADHQVQEDYGFFKEQILMADYTDTLIPSSTFEAFLWQN 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 14667212 14667988 + CrPI670011_06g017190.1 Cre06g1719 501181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1719 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 203 IPR051032 -
Cre06g1719 258 ProSiteProfiles AP2/ERF domain profile. 59 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1719 258 MobiDBLite consensus disorder prediction 1 61 - -
Cre06g1719 258 SMART rav1_2 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1719 258 FunFam Ethylene-responsive transcription factor 2 58 117 - -
Cre06g1719 258 SUPERFAMILY DNA-binding domain 59 117 IPR016177 GO:0003677(InterPro)
Cre06g1719 258 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1719 258 MobiDBLite consensus disorder prediction 20 38 - -
Cre06g1719 258 MobiDBLite consensus disorder prediction 123 172 - -
Cre06g1719 258 MobiDBLite consensus disorder prediction 146 172 - -
Cre06g1719 258 CDD AP2 60 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1719 258 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1719 258 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1719 258 Pfam AP2 domain 58 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1719 Cre-Chr6:14667212 Cre11g1934 Cre-Chr11:31117500 9.20E-48 dispersed
Cre10g0498 Cre-Chr10:4143869 Cre06g1719 Cre-Chr6:14667212 8.40E-37 transposed
Cre11g0713 Cre-Chr11:4246311 Cre06g1719 Cre-Chr6:14667212 8.40E-46 wgd
Cre06g1719 Cre-Chr6:14667212 Cre09g0167 Cre-Chr9:1934111 5.60E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53892 PF00847 AP2 3.00E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1719 K09286 - csv:101219745 365.925