Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1819 ATGAAGGAGGAAGGAGAGTGTTTTGAAGAGCAGCTTGTAATGCAACAATATCGAACGATGCAGCAAAACGGTGACGTTTTTGGAGGAGGAGGGTTTATTTTTCCTGAGGTTTCTCCGTTGATGTTTCCGGCCACAACCGTGCATCAAGTCCACGGCTTCAACCCGTTTTCTAATCCGACGATCCTAGACCACCACGACTCGTTTATCCCGCCGCTGCAACCGCCAACCTCCTATGGCAGTTTCTTCAACAGAAGAAATGCTTCGTCTCTGCAGTTCCCTCCTTACGATAATGTTGGTTGTGCTCCATTTGAGCTGACCAAGATGACCGCTCAAGAAATAATGGACGCCAAAGCACTTGCAGCCTCTAAAAGCCATAGTGAAGCTGAGAGAAGAAGAAGAGAGAGAATCAATAATCATCTTGCTAAGTTACGAAGCTTACTCCCAAACACCACTAAAACCGACAAGGCGTCATTGCTAGCAGAAGTAATCCAACATGTGAAAGAGCTGAAACGACAGACGACGTTGATAGCCGATGTAAGTCTGCTGCCGACGGAGCTGGACGAGCTATCGGTGGATGTCGATGCGTCCGACGAGGACGGGAAGTCTGTGATCAAAGCCTCGTTTTCTTGTGAGGACAGGTCAGATCTTTTGCCACAAATCATCAAAACCCTAAAATCCCTCCACTTGAGAACTTTAAAAGCAGAGATCACGACGCTCGGCGGCCGCGTAAGAAACGTATTGTTCATCACCAGCGATGACGACTCCTCCAACGACCAACAAGATCAGGCTCAACAACACCAACATCACCAATACAGCATCAGTTCCATTCAAGAAGCCCTAAAGGGCGTGATGGAAAAGGTTTGTAGCGAAGACCAGTCGTCTTCAGGCAGCATTAAAAGACAAAGGACCAATAATCACAACAACATCAATATCATCCAACACAGGTCTTTCTAG 954 47.17 MKEEGECFEEQLVMQQYRTMQQNGDVFGGGGFIFPEVSPLMFPATTVHQVHGFNPFSNPTILDHHDSFIPPLQPPTSYGSFFNRRNASSLQFPPYDNVGCAPFELTKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTTLIADVSLLPTELDELSVDVDASDEDGKSVIKASFSCEDRSDLLPQIIKTLKSLHLRTLKAEITTLGGRVRNVLFITSDDDSSNDQQDQAQQHQHHQYSISSIQEALKGVMEKVCSEDQSSSGSIKRQRTNNHNNINIIQHRSF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 19924420 19925526 + CrPI670011_06g018190.1 Cre06g1819 501281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1819 317 Gene3D - 115 175 IPR036638 GO:0046983(InterPro)
Cre06g1819 317 PANTHER TRANSCRIPTION FACTOR BHLH30 104 305 IPR045847 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1819 317 SMART finulus 126 175 IPR011598 GO:0046983(InterPro)
Cre06g1819 317 Pfam Helix-loop-helix DNA-binding domain 123 170 IPR011598 GO:0046983(InterPro)
Cre06g1819 317 MobiDBLite consensus disorder prediction 291 317 - -
Cre06g1819 317 CDD bHLH_AtAIG1_like 115 194 - -
Cre06g1819 317 FunFam transcription factor bHLH30 115 178 - -
Cre06g1819 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 174 IPR036638 GO:0046983(InterPro)
Cre06g1819 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1819 Cre-Chr6:19924420 Cre10g1512 Cre-Chr10:29056803 1.30E-38 dispersed
Cre06g1819 Cre-Chr6:19924420 Cre05g2478 Cre-Chr5:36175170 1.60E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53895 PF00010 HLH 2.10E-12 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1819 - - - 0.0