Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1837 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCCGAAGCACGAGCAAGGTTAGCAAATACTAGAGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACTCCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCTGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGGCAGTAGTTTCTATTAGAACTGCTGAGGCTGGGCTGGTTTGGATGGTAGGAGACAGCACCATGTGGAGAGAGGTTGATCCAAGGACAATGCTTTTGAAGCCTATCGATTGTATTAAGACAAGAGCTGGTCACTTCCCAAAGGAGGAATTTTACTCTCTTCAGACAAGGGCATCTCCAGATTTTCATGAATACACTGTCAATGTGGAGGTGGAAACGCCAAATCCATTTGCCAAGGAGGGCTTTGTTGTGCTGTTTTATGTTAATGATTCCCAATCCTCCATCTTCCACAGGTTTCTTGAGGCTATCTCACCTCAAAAGTACAGTCTTTTTGCTAAGTTGGCCGAGAAGCGTAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCAGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG 2421 44.94 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEAVVSIRTAEAGLVWMVGDSTMWREVDPRTMLLKPIDCIKTRAGHFPKEEFYSLQTRASPDFHEYTVNVEVETPNPFAKEGFVVLFYVNDSQSSIFHRFLEAISPQKYSLFAKLAEKRNIGDLILNVGAGGGASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLFG 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23259787 23267991 + CrPI670011_06g018370.1 Cre06g1837 501299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1837 806 MobiDBLite consensus disorder prediction 772 806 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 597 620 - -
Cre06g1837 806 Coils Coil 167 187 - -
Cre06g1837 806 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cre06g1837 806 MobiDBLite consensus disorder prediction 157 176 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 400 414 - -
Cre06g1837 806 CDD SANT 10 53 IPR001005 -
Cre06g1837 806 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cre06g1837 806 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cre06g1837 806 CDD SANT_CDC5_II 55 106 IPR047240 -
Cre06g1837 806 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cre06g1837 806 Coils Coil 514 534 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 110 150 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 382 421 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 597 612 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 213 234 - -
Cre06g1837 806 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cre06g1837 806 SMART sant 58 105 IPR001005 -
Cre06g1837 806 SMART sant 6 55 IPR001005 -
Cre06g1837 806 Gene3D - 59 114 - -
Cre06g1837 806 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cre06g1837 806 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cre06g1837 806 Pfam 60s Acidic ribosomal protein 736 805 - -
Cre06g1837 806 Pfam Myb-like DNA-binding domain 10 70 - -
Cre06g1837 806 Pfam pre-mRNA splicing factor component 407 640 IPR021786 -
Cre06g1837 806 Gene3D - 5 58 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 784 800 - -
Cre06g1837 806 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 641 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1837 Cre-Chr6:23259787 Cre10g0957 Cre-Chr10:13116172 1.30E-10 dispersed
Cre10g1032 Cre-Chr10:20070133 Cre06g1837 Cre-Chr6:23259787 4.80E-06 dispersed
Cre06g1837 Cre-Chr6:23259787 Cre11g0805 Cre-Chr11:5289491 3.40E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53896 PF11831 Myb_Cef 6.70E-53 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1837 K12860 - csv:101205030 1199.11