Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1837 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCCGAAGCACGAGCAAGGTTAGCAAATACTAGAGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACTCCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCTGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGGCAGTAGTTTCTATTAGAACTGCTGAGGCTGGGCTGGTTTGGATGGTAGGAGACAGCACCATGTGGAGAGAGGTTGATCCAAGGACAATGCTTTTGAAGCCTATCGATTGTATTAAGACAAGAGCTGGTCACTTCCCAAAGGAGGAATTTTACTCTCTTCAGACAAGGGCATCTCCAGATTTTCATGAATACACTGTCAATGTGGAGGTGGAAACGCCAAATCCATTTGCCAAGGAGGGCTTTGTTGTGCTGTTTTATGTTAATGATTCCCAATCCTCCATCTTCCACAGGTTTCTTGAGGCTATCTCACCTCAAAAGTACAGTCTTTTTGCTAAGTTGGCCGAGAAGCGTAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCAGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG 2421 44.94 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEAVVSIRTAEAGLVWMVGDSTMWREVDPRTMLLKPIDCIKTRAGHFPKEEFYSLQTRASPDFHEYTVNVEVETPNPFAKEGFVVLFYVNDSQSSIFHRFLEAISPQKYSLFAKLAEKRNIGDLILNVGAGGGASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLFG 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23259787 23267991 + CrPI670011_06g018370.1 Cre06g1837 501299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1837 806 MobiDBLite consensus disorder prediction 772 806 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 597 620 - -
Cre06g1837 806 Coils Coil 167 187 - -
Cre06g1837 806 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cre06g1837 806 MobiDBLite consensus disorder prediction 157 176 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 400 414 - -
Cre06g1837 806 CDD SANT 10 53 IPR001005 -
Cre06g1837 806 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cre06g1837 806 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cre06g1837 806 CDD SANT_CDC5_II 55 106 IPR047240 -
Cre06g1837 806 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cre06g1837 806 Coils Coil 514 534 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 110 150 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 382 421 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 597 612 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 213 234 - -
Cre06g1837 806 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cre06g1837 806 SMART sant 58 105 IPR001005 -
Cre06g1837 806 SMART sant 6 55 IPR001005 -
Cre06g1837 806 Gene3D - 59 114 - -
Cre06g1837 806 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cre06g1837 806 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cre06g1837 806 Pfam 60s Acidic ribosomal protein 736 805 - -
Cre06g1837 806 Pfam Myb-like DNA-binding domain 10 70 - -
Cre06g1837 806 Pfam pre-mRNA splicing factor component 407 640 IPR021786 -
Cre06g1837 806 Gene3D - 5 58 - -
Cre06g1837 806 MobiDBLite consensus disorder prediction 784 800 - -
Cre06g1837 806 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 641 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1837 K12860 - - csv:101205030 1199.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1837 Cre-Chr6:23259787 Cre10g0957 Cre-Chr10:13116172 1.30E-10 dispersed
Cre10g1032 Cre-Chr10:20070133 Cre06g1837 Cre-Chr6:23259787 4.80E-06 dispersed
Cre06g1837 Cre-Chr6:23259787 Cre11g0805 Cre-Chr11:5289491 3.40E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1837 . 1 635 MYB-Related Transcription Factor Family AT1G09770 83.6 3.5e-298 1021.1
Cre06g1838 . 226 441 MYB-Related Transcription Factor Family AT1G09770 53.7 1.7e-50 198.4
Cre10g0957 . 322 774 MYB-Related Transcription Factor Family AT3G18100 57.8 4.5e-150 528.9
Cre10g0957 . 322 774 MYB-Related Transcription Factor Family AT3G18100 57.8 4.5e-150 528.9
Cre06g1837 . 1 635 MYB-Related Transcription Factor Family AT1G09770 83.6 3.5e-298 1021.1
Cre06g1838 . 226 441 MYB-Related Transcription Factor Family AT1G09770 53.7 1.7e-50 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53896 PF11831 Myb_Cef 6.70E-53 No_clan Cre TF