Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g1837 | ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACCGAAGATGAGATCCTTAAAGCCGCGGTTATGAAATATGGCAAAAACCAATGGGCTCGAATTTCGTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGCAAGGCTCGCTGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCTGACCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCCGAAGCACGAGCAAGGTTAGCAAATACTAGAGGAAAGAAGGCAAAAAGGAAAGCCAGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGCTACAAAAAAGGAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAACGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAACAACAATTGAAGAACTAGAAGGCAAAAGAAGGGTTGATGTAGAGGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAAATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCACAGACTCCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGTAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCGGAGCTGCATCCTTCAGACTTTTCTGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGAATGACTCCAAAAGGAACGCCTATTAGAGATGAGTTACGTATCAATGAAGATATGGACGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCGGCAGGCTTTGCTTAGGAAAAGATCAAAAGTACTACAAAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGCTCATTTGTTCCACCTACCCCTATTGAGCAGGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTACCCAATTGATGAAAAGGCTAGCAAGGAGAGAAAGAAAGGTTCAAAGCGCACTGGAAATGGACCTACTGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGTGATGGAAGAGGCAGTAGTTTCTATTAGAACTGCTGAGGCTGGGCTGGTTTGGATGGTAGGAGACAGCACCATGTGGAGAGAGGTTGATCCAAGGACAATGCTTTTGAAGCCTATCGATTGTATTAAGACAAGAGCTGGTCACTTCCCAAAGGAGGAATTTTACTCTCTTCAGACAAGGGCATCTCCAGATTTTCATGAATACACTGTCAATGTGGAGGTGGAAACGCCAAATCCATTTGCCAAGGAGGGCTTTGTTGTGCTGTTTTATGTTAATGATTCCCAATCCTCCATCTTCCACAGGTTTCTTGAGGCTATCTCACCTCAAAAGTACAGTCTTTTTGCTAAGTTGGCCGAGAAGCGTAACATTGGTGATTTAATCCTCAATGTTGGGGCTGGTGGTGGTGCCTCAGTCCCAGCTGGTGGAGCTGCTGGTGGCGCTGCTGCCGCAGCTGCTCCTCCACCTAAAGAGAAAAAGGAAGAACCTAAGGAAGAGAGTGACGATGATATGGGATTTAGTTTGTTCGGTTAG | 2421 | 44.94 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARRQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKASKERKKGSKRTGNGPTAVIPTIDDFEETVMEEAVVSIRTAEAGLVWMVGDSTMWREVDPRTMLLKPIDCIKTRAGHFPKEEFYSLQTRASPDFHEYTVNVEVETPNPFAKEGFVVLFYVNDSQSSIFHRFLEAISPQKYSLFAKLAEKRNIGDLILNVGAGGGASVPAGGAAGGAAAAAAPPPKEKKEEPKEESDDDMGFSLFG | 806 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 23259787 | 23267991 | + | CrPI670011_06g018370.1 | Cre06g1837 | 501299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 772 | 806 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 597 | 620 | - | - | |
Cre06g1837 | 806 | Coils | Coil | 167 | 187 | - | - | |
Cre06g1837 | 806 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 400 | 414 | - | - | |
Cre06g1837 | 806 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Cre06g1837 | 806 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Cre06g1837 | 806 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Cre06g1837 | 806 | CDD | SANT_CDC5_II | 55 | 106 | IPR047240 | - | |
Cre06g1837 | 806 | FunFam | CDC5 cell division cycle 5-like | 60 | 120 | - | - | |
Cre06g1837 | 806 | Coils | Coil | 514 | 534 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 110 | 150 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 382 | 421 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 597 | 612 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 213 | 234 | - | - | |
Cre06g1837 | 806 | FunFam | CDC5 cell division cycle 5-like | 5 | 59 | - | - | |
Cre06g1837 | 806 | SMART | sant | 58 | 105 | IPR001005 | - | |
Cre06g1837 | 806 | SMART | sant | 6 | 55 | IPR001005 | - | |
Cre06g1837 | 806 | Gene3D | - | 59 | 114 | - | - | |
Cre06g1837 | 806 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - | |
Cre06g1837 | 806 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Cre06g1837 | 806 | Pfam | 60s Acidic ribosomal protein | 736 | 805 | - | - | |
Cre06g1837 | 806 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - | |
Cre06g1837 | 806 | Pfam | pre-mRNA splicing factor component | 407 | 640 | IPR021786 | - | |
Cre06g1837 | 806 | Gene3D | - | 5 | 58 | - | - | |
Cre06g1837 | 806 | MobiDBLite | consensus disorder prediction | 784 | 800 | - | - | |
Cre06g1837 | 806 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 641 | IPR047242 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g1837 | Cre-Chr6:23259787 | Cre10g0957 | Cre-Chr10:13116172 | 1.30E-10 | dispersed | |
Cre10g1032 | Cre-Chr10:20070133 | Cre06g1837 | Cre-Chr6:23259787 | 4.80E-06 | dispersed | |
Cre06g1837 | Cre-Chr6:23259787 | Cre11g0805 | Cre-Chr11:5289491 | 3.40E-08 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53896 | PF11831 | Myb_Cef | 6.70E-53 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g1837 | K12860 | - | csv:101205030 | 1199.11 |