Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1838 ATGAGAGTCGGAGAGGGCAACACCCTCCTCAAAGTAAGGGTGGAGCGTAACTTGTTCTTTCTCAAGGAGTGTGATGCAGGGTCGAATGTGGTGATTGAGGAAAAGGCGTCACCATGGAGTTTGGGGAAGGAAGTTGATGCCGTATTTGATGTGGTAGAAACGATTGTGGTGAGAAAGGGGAAAGCTTTTGTTGTGTGGTTGGACATGGAGAGGGGTTTGAGAAAATTGTTTGGAGAGAATATTAAGGTGAGACGCTTTCATGGGTTGGATAGTGGGGTGGAGGTGATTTTGGACGTGGATCACTGGGGTGGAGTTCTTGGTCCATTAATTGTCAATGGAATGACATCTCAATCGTTGGGCGAAGAAAAGTTGGAGGATTGTAGGCAAAAGGTTGAAGATGGTGATGTGTCTTCTTTGCACCATGGAGAATCGAGAGAGGTCTCTAGTCTTAGAAGGAAAGGTGTTGAACATGTCTTTTTGACCTCTGATCCATCAGTGGTTAGCTATTCAGGGGACTATCCCTCCTTGTCCTCTCCAGCTAGAGCTTTTACAGATGGGGTGATTTGGCCTCCTTTTTTGACGAAGTGTTTATGTGAGGAAGGTTTGGTTAAAGTTGGGAATCCTAAGATTTTGAGAAGTAGCCAACTGTTCAATCCTACTCTTGTCGTTTATGTGGCCGATTATTTGATAAAGGAAGAGGTCCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAATTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAACTAGCGGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGATCCAAACAAAGCCTTTGGCCGCAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAACAAGAGATGTCAGCTGCTTCACACAGAATTAGTGGTATCTGGGAAGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTGCGTTATGGAAATCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCTCAAAGCACAGGCACAAAAGGAAGAAGAAATCGCAGCGCAGAGCCGTGCTCTTCAGTTGGCTGAGGCTGAGGCTGATCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGCCATGTCTGCATCAGTAGCAGTTGATTGTGAAAATTCTGTGCCTGTTACCTCAACCTCCAATGAATTAACGGGTGAACAACTGAACTCGTCTGTGGGACATGAACACGAAACTTCTAATGCCATGGATATCGACACAGAAAAAGAAAGTGTACCGGTGAGCTTGGATATTGGTTTGTCTGATAACAAACTACCTTCTACAGTGGGAGAGAATGCATCATTGCCTGACAATGGCTTTGAAGATTATGATAAAAGTCAAACCATTGATGTTCCCTCTCAAGAACTCTCGGGTCCTGTTACAAATGGCACTCCAGATGTGACTGTTACAGTGGAAAATAACATCAGCAACGATTCAGTTGATGGTACAGCTATTGAAAATGTTAAATGTAGGACCGATATCGTCGAGGAAGTCAAAGATGCTGAAACTCAACAGTCTGTGACCGAAACTGAAAATAACTCAGATGTGCATTTGACTAATCTGGATTCTGCTGCACCGGCATCTTCTAATGAGGGTAACGGGGAACTCCCTAGTGGCGAAGGGGAAGCAATGGAATCAAATGTCTAG 1872 44.18 MRVGEGNTLLKVRVERNLFFLKECDAGSNVVIEEKASPWSLGKEVDAVFDVVETIVVRKGKAFVVWLDMERGLRKLFGENIKVRRFHGLDSGVEVILDVDHWGGVLGPLIVNGMTSQSLGEEKLEDCRQKVEDGDVSSLHHGESREVSSLRRKGVEHVFLTSDPSVVSYSGDYPSLSSPARAFTDGVIWPPFLTKCLCEEGLVKVGNPKILRSSQLFNPTLVVYVADYLIKEEVRYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDLKAQAQKEEEIAAQSRALQLAEAEADQTVGENADSSEAMSASVAVDCENSVPVTSTSNELTGEQLNSSVGHEHETSNAMDIDTEKESVPVSLDIGLSDNKLPSTVGENASLPDNGFEDYDKSQTIDVPSQELSGPVTNGTPDVTVTVENNISNDSVDGTAIENVKCRTDIVEEVKDAETQQSVTETENNSDVHLTNLDSAAPASSNEGNGELPSGEGEAMESNV 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23270974 23277232 + CrPI670011_06g018380.1 Cre06g1838 501300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1838 623 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 225 397 IPR047242 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0005681(PANTHER)
Cre06g1838 623 Coils Coil 390 423 - -
Cre06g1838 623 MobiDBLite consensus disorder prediction 573 623 - -
Cre06g1838 623 MobiDBLite consensus disorder prediction 450 473 - -
Cre06g1838 623 MobiDBLite consensus disorder prediction 580 610 - -
Cre06g1838 623 MobiDBLite consensus disorder prediction 450 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1838 K12860 - - csv:101206265 591.652
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g1837 . 1 635 MYB-Related Transcription Factor Family AT1G09770 83.6 3.5e-298 1021.1
Cre06g1838 . 226 441 MYB-Related Transcription Factor Family AT1G09770 53.7 1.7e-50 198.4
Cre10g0957 . 322 774 MYB-Related Transcription Factor Family AT3G18100 57.8 4.5e-150 528.9
Cre10g0957 . 322 774 MYB-Related Transcription Factor Family AT3G18100 57.8 4.5e-150 528.9
Cre06g1837 . 1 635 MYB-Related Transcription Factor Family AT1G09770 83.6 3.5e-298 1021.1
Cre06g1838 . 226 441 MYB-Related Transcription Factor Family AT1G09770 53.7 1.7e-50 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49