Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre06g1867 | ATGGATCACAATCACTGCAATGGAAACTCTGATTCTCATATCAAAATACCAAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTCGTTGACTCAATTTCAGGGAAAACCTTTGAGACCATAGATCCGAGAACCGAGGAGGTTATAACGACGGTCGCCGCTGGGGACAAACAAGACGTTGATTTGGCCGTGAAAGCCGCCCGTGAAGCCTTCGATCATGGCCCTTGGCCCCGCATGTCCGGCGCCGAGAGGGGCAGGATAATGATGAAACTAGCGGAATTGATAGACGAACACATGGAGGAATTAGCAGCGTTGGATACGATCGACGCTGGAAAATCGTTTCTAATGGGAAAGATCGTAGATATACCGGGGGCTGCAAATACGCTACGGTACTACGCAGGAGCAGCCGATAAATTCCACGGCGAAGTATTGAAAATGGCAAAACCGCTTCACGGTTACACGTTACTTGAGCCTATTGGAGTGGTGGGCCACATCATACCGTGGAATTTTCCGACGACCATGTTCTGGTTGAAAGTCAGCCCGGCGTTAGCCGCCGGCTGCACCATGATCGTCAAACCGGCCGAACAAACCCCTCTCTCCGCCCTCTTCTACGCCCATCTCGCCAAATTGGCTGGTATACCAGATGGAGTTCTGAACGTGGTGACTGGATATGGACCGACGGCAGGGTCAGGCATTGCGTCCCACATGGACATTGACAAGGTGAGCTTCACGGGATCAACTAAGGTGGGAAGGCTGGTAATGCAGGCAGCAAGTGCCAGTAATCTGAAGCAAGTGTCCTTGGAATTAGGAGGCAAATCACCCCTTCTAGTCTTTGATGATGCAGATCTGGACAAAGCAGTTGATCTTGCTCTCCTAGCTATTTTTTATAACAAGGGGGAAATTTGCGTGGCTGGCTCCCGGGTTTTGGTTCAAGAAGGGATATACGACGAATTCGTGAAAAAGATTACTGAAAAGGTCAAATCTTGGGTTGTGGGAGACCCTTTTGATCCTAAAGTTAAATATGGACCCCAGGTGGACAAAAAGCAAATGGATAAAATTCTGAAATACATAGAACAGGGTAAAAAGGAAGGGGCAACATTGGTTACTGGCGGCAAGCGTATAGGCGAAGTGGGGTATTACGTTGAGCCCACAATCTTCACAAATGTCAAGGAAGACTCACTAATTGCCCAGGACGAAATATTCGGCCCCGTCCTCTCAGTCATAAAATTCAAGACAATTGAAGACGGAATAAGGAGTGCAAACAACACCAAGTACGGGCTAGCAGCTGGGATAGTGACGAACAGCTTAGACATAGCGAACACAGTGTCTAGGTCGATTCGAGCTGGTACGATTTGGATAAATTGTTACTTCGCTTTTGACCCAAGTTGCCCATTTGGTGGGTACAAGGCCAGTGGATTCGGAAGAGACTCTGGAATGCACGCTATCCAAAAGTATCTTCAAACTAAATCTGTTGTCATTCCTTTGGTTAACACTCCTTGGCTTTGA | 1509 | 47.58 | MDHNHCNGNSDSHIKIPKIKFTKLFINGQFVDSISGKTFETIDPRTEEVITTVAAGDKQDVDLAVKAAREAFDHGPWPRMSGAERGRIMMKLAELIDEHMEELAALDTIDAGKSFLMGKIVDIPGAANTLRYYAGAADKFHGEVLKMAKPLHGYTLLEPIGVVGHIIPWNFPTTMFWLKVSPALAAGCTMIVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGYGPTAGSGIASHMDIDKVSFTGSTKVGRLVMQAASASNLKQVSLELGGKSPLLVFDDADLDKAVDLALLAIFYNKGEICVAGSRVLVQEGIYDEFVKKITEKVKSWVVGDPFDPKVKYGPQVDKKQMDKILKYIEQGKKEGATLVTGGKRIGEVGYYVEPTIFTNVKEDSLIAQDEIFGPVLSVIKFKTIEDGIRSANNTKYGLAAGIVTNSLDIANTVSRSIRAGTIWINCYFAFDPSCPFGGYKASGFGRDSGMHAIQKYLQTKSVVIPLVNTPWL | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 24887395 | 24891016 | + | CrPI670011_06g018670.1 | Cre06g1867 | 501329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre06g1867 | 502 | FunFam | Aldehyde dehydrogenase3 | 272 | 461 | - | - | |
| Cre06g1867 | 502 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 272 | 461 | IPR016163 | GO:0016620(InterPro) | |
| Cre06g1867 | 502 | PANTHER | ALDEHYDE DEHYDROGENASE-RELATED | 22 | 494 | - | GO:0004029(PANTHER) | |
| Cre06g1867 | 502 | FunFam | ALD5p Mitochondrial aldehyde dehydrogenase | 26 | 294 | - | - | |
| Cre06g1867 | 502 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 26 | 490 | IPR016162 | GO:0016491(InterPro) | |
| Cre06g1867 | 502 | SUPERFAMILY | ALDH-like | 16 | 498 | IPR016161 | GO:0016491(InterPro) | |
| Cre06g1867 | 502 | FunFam | Aldehyde dehydrogenase, putative | 464 | 490 | - | - | |
| Cre06g1867 | 502 | ProSitePatterns | Aldehyde dehydrogenases glutamic acid active site. | 268 | 275 | IPR029510 | GO:0016491(InterPro) | |
| Cre06g1867 | 502 | ProSitePatterns | Aldehyde dehydrogenases cysteine active site. | 296 | 307 | IPR016160 | GO:0016491(InterPro) | |
| Cre06g1867 | 502 | Pfam | Aldehyde dehydrogenase family | 30 | 492 | IPR015590 | GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre06g1867 | Cre-Chr6:24887395 | Cre06g2558 | Cre-Chr6:33193422 | 1.90E-161 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre06g1867 | K12355 | - | csv:101219029 | 917.531 |