Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1871 ATGAGTTCGCCAAAAATTGGTCAAAATGTAAGCTTTAGTGCTCCGAGGCCATTTGGGCACAGGCTAAAATCGGATATGAAAGAGACGTTTTTCCCTGATGATCCGTTCAGACGGTTTCGAAATGAAAGAGGCGCAATACAAAGAGTGAAAAAGGGGTTCCAATATTTCATACCCATATTGGAATGGTTTCCTAAATACAATTTGAATATGTTTAAGTATGATTTGCTTGCTGGTATTACCATTACCAGCCTTGCTATTCCTCAAGGCATTAGTTATGCCAAACTCGCCGTCCTCCCTCCCATTATCGGCCTCTATTCAAGCTTCGTTCCGCCGCTTGTATACGCGGTGTTTGGAAGCTCAAAGCATCTGGCGGTGGGAACGGTGGCTGCATGTTCGTTGCTGATATCGGAAATTATTGGAGAAGTGGCTTCGCCAGAAGAAGAACCCACATTGTACCTCCACTTGGTTTTCACCGCCACTTTTATCACCGGCATCATGCAGGCTGCATTAGGCTTTCTAAGATTGGGAATTTTGGTAGATTTCTTATCGCACTCAACAATCCTTGGGTTTATGGGAGGAACGGCTGTGATCATTTCCCTTCAACAACTGAAAGGCATATTTGGACTCACTCATTTCACCTCTAAAACTGACGTTTATTCTGTACTTCATGCCGTTTTCTCCCTTAGAAAAGAGTGGAAATGGCAAAGTGCTGTGGTGGGCATCGTTTTCCTTGTATTCCTCCAGTTTACTCGCTACTTGAGAAACAGAAATCCGAAGCTATTTTGGGTGTCAGCGATGGCTCCCATGGTGACTGTAATAATAGGTTGTTTGTTTGCATATTTCATCAATGGAACTCAGCATGGAATCTTAACTGTGGGTCATTTGAGCAAAGGAATAAACCCTCTTTCTATTCACTTCTTGAACTTCGACTCCAAATATCTATCAGCTGTAGTACAAGCTGGCTTGATCACTGGCCTTGTCGCTATGGCGGAAGGAATAGCAATTGGTCGGAGCTTTGCAATTATGAAAAATGAACAAATCGATGGGAATAAGGAGATGATAGCCTTTGGTTTGATGAACATAGTGGGATCTTTCACTTCCTGCTACTTAACCACTGGGCCATTCTCAAAGACGGCAGTGAACTTCAATGCTGGGTGTAGAACAGCAATGTCAAACATAGTTATGGCAATCTTCATGGCTCTCACCCTCCTCTTTCTAGCTCCTCTCTTTAGCTACACACCTCTTGTTGCCCTTTCCGCCATTATCATGTCTGCCATGCTTGGTCTCATCAAATATGAAGAAATGTATCATCTTCTCAAAGTTGACAAATTCGATTTTTGCATTTGTATGGCGGCTTTCTTGGGTGTTGCCTTCTTAAGCATGGATGTTGGCATCATGCTTTCGGTGGGACTTGCTTTACTGAGAGCTCTTCTGTACATGGCTAGACCAGCTACTTGCAAGCTCGGGAAAATACCAAACTCCAGTTTGTACAGAGATGTGGAGCAGTATCCTAATGCAACCAGAGCCCATGGAATTATGGTTCTTCAACTTGGTTCCCCTGTTTATTATGCCAACTCCAACTACATCAGAGAAAGGATTTTCAGATGGGTTCGTGATGAGCAAGCCGATCCCAACTATGGATCCGTCGAACATGTACTCCTGGAGTTGAGCGGAGTTACCTCAATCGACATGACAGGGATTGAAACTCTAGTTGAAATCCGCAAATCATTACAAGCAAATGGAATCCAGATGGGAATTGTAAACCCAAGAATTGTAGTGATGGAGAAGATGATAGCTTCGGATTTCACAAACACAATCGGAAAAGAGAACATTTATTTGTCGGTGGATGAGGGAGTGGAAAGGTGCAGAGATTTGGTACCGAAATTAAAGCAAACAGAAACAAGTCCTCGAAGTTCGAACATGACGACAATGGAGCAGCAAGTATAA 1947 43.25 MSSPKIGQNVSFSAPRPFGHRLKSDMKETFFPDDPFRRFRNERGAIQRVKKGFQYFIPILEWFPKYNLNMFKYDLLAGITITSLAIPQGISYAKLAVLPPIIGLYSSFVPPLVYAVFGSSKHLAVGTVAACSLLISEIIGEVASPEEEPTLYLHLVFTATFITGIMQAALGFLRLGILVDFLSHSTILGFMGGTAVIISLQQLKGIFGLTHFTSKTDVYSVLHAVFSLRKEWKWQSAVVGIVFLVFLQFTRYLRNRNPKLFWVSAMAPMVTVIIGCLFAYFINGTQHGILTVGHLSKGINPLSIHFLNFDSKYLSAVVQAGLITGLVAMAEGIAIGRSFAIMKNEQIDGNKEMIAFGLMNIVGSFTSCYLTTGPFSKTAVNFNAGCRTAMSNIVMAIFMALTLLFLAPLFSYTPLVALSAIIMSAMLGLIKYEEMYHLLKVDKFDFCICMAAFLGVAFLSMDVGIMLSVGLALLRALLYMARPATCKLGKIPNSSLYRDVEQYPNATRAHGIMVLQLGSPVYYANSNYIRERIFRWVRDEQADPNYGSVEHVLLELSGVTSIDMTGIETLVEIRKSLQANGIQMGIVNPRIVVMEKMIASDFTNTIGKENIYLSVDEGVERCRDLVPKLKQTETSPRSSNMTTMEQQV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25106598 25109541 + CrPI670011_06g018710.1 Cre06g1871 501333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1871 648 SUPERFAMILY SpoIIaa-like 505 623 IPR036513 -
Cre06g1871 648 CDD STAS_SulP_like_sulfate_transporter 503 615 - -
Cre06g1871 648 Pfam Sulfate permease family 71 452 IPR011547 GO:0016020(InterPro)
Cre06g1871 648 PANTHER SULFATE TRANSPORTER 45 623 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre06g1871 648 Pfam STAS domain 503 617 IPR002645 -
Cre06g1871 648 ProSitePatterns SLC26A transporters signature. 100 121 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cre06g1871 648 Gene3D STAS domain 482 625 IPR036513 -
Cre06g1871 648 FunFam Sulfate transporter 31 482 624 - -
Cre06g1871 648 NCBIfam sulfate permease 58 617 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cre06g1871 648 ProSiteProfiles STAS domain profile. 502 622 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1871 Cre-Chr6:25106598 Cre09g0691 Cre-Chr9:6600917 5.30E-201 dispersed
Cre06g1869 Cre-Chr6:25046522 Cre06g1871 Cre-Chr6:25106598 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1871 K17471 - csv:116402148 1157.13