Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1872 ATGAATCCTAAATCCCATTTCAACCCTCTTTTCCATTTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCGCCGCCCTCCCCTCCGTCGGCCATGGCAGCCTCTCCGACGCCGAAGCTCTCTTCATCCGCCACCGCCAGCTTCTTTACTACAGAGACGAGTGGGGTGACCGTGGGGAACAACTCACTGTCGACCCATCTCTTGTTTTCGAAAATGAGAGAATTAGAAATGCTTACATTGCACTTCAAGCTTGGAAACTAGCCATTTTATCAGACCCTCTTAATCAAACCGCCAATTGGGTCGGATCTAATGTCTGCACCTACTTCGGCGTTTTCTGTGCTCCCGCATTGGACAACCCCAAAATCCGTACCGTCGCCGGAATCGATCTCAACCACGGCGACATTGCCGGATACCTCCCTGAAGAGCTCGGTTTGCTTACCGATCTTGCATTGTTCCACATCAACTCTAACAGATTCTGCGGTACTTTACCCCACAAATTCGACCGTCTCAAGTTGCTTTACGAATTGGATCTCAGTAATAACCGCTTCGCCGGCAAGTTCCCCGACGTCGTTCTCAGGCTTCCGACGCTCAAGTTCTTGGATCTGAGGTTTAATGAATTTGAAGGGAATGTACCTAGAGAGCTGTTCGACAAGGATTTGGACGCTATTTTTATTAACCACAACAGGTTTAGATTCGAACTGCCGGATAATTTTGGGAACTCGCCGGTGTCGGTGATTGTGCTTGCGAACAATAAGTTCCATGGATGTGTGCCTTCGAGCTTGGGGAATATGACGAGGCTGAATGAGATTATTCTGATGAACAATGGGCTTAATTCTTGCTTGCCGCCGGAAATTGGGGCGTTGAAGAACTTGACGGTGTTTGATGTTAGTTCGAATGAGTTGGTGGGTCCGTTGCCGGAGAGTTTTGGAGGGCTTGTGAGTTTGGAGCAACTTAATGTGGCGAATAATTTTCTTTCTGGGAAGATTCCGGAGAGTATTTGTAAGTTGCCTAAGCTTCAGAACTTTACGTTCTCGAATAACTTCTTCTCCGGTGAGCCACCGGTATGTTTGAGGGTTCCGGATTTCAGTGATCGGAGGAATTGCTTGGCTGGACGGCCCGGGCAGCGGTCGACTGGGCAATGTAGGACGTTCTTGTCGAGACCTGTTGATTGTAATGCGTTTAAATGCGGTGGTTCATCTTCTAGTTCGCCTTCTACTCCATTTACTCCGCCAGTGGTTTCGCCCTCATCGCCTCCGTCCCCGGCAGGGGCGGCGTCTCCTTCATCGCCGTCTCATTCTCCCAATGCACCACCGGCGCCACCGCTCTCGCCCCATTTTCCTCCTCTGTCGCCACAATCGCCACCGTCGCCGCCGCCTTCTTCCCCATCGACGCCGTCTCAGCCGTCGACACCGTCGTCGCCTTCTTCCCCATCGACGCCGTCACAGCCGTCGACACCGCCGTCGCCTTCTTCTCCATCTACCCCTTCAACTCCTTCCACCCCGCCCCATTTTCCCTCTCCATCGGCGCCGTCGCCTTCATCTCCGCCTCGAGGTCATGCTCCCCCGTCATTACCGTCACCTTCATCGCCCCCACAAGGTCATACTCCGCCGTCTGAGCCCTCACCATCATCACCACCCCACGGCCATACTCCGCCGGGTCCACCTTCGTCTGAGCCCTCGCCACCATCGCCGTCACAAGGTCACACTCCGTCGGCTCCTCCTTCTACGTCCGAGCCCTCACCACCATCGCCGCCACAAGGTCACACTCCGCCGGCTCCTCCTTCGCCGTCCGAGCCGTCGCCTTCATCCCCGCCACATGTTAGCACTCCGGCCATTCCCCCTTCGCCATCCGAGCCATCACCTTCCTCACCGCCTCAAGGCCATGTTCCTCCGGCGGAGCCTTCTCCTCCAGGAACATCATCACCACCAGCACCACCATTCCCAGTTTACATTCCGCCTCCGCCACAGTTCCCTGATTTCCCTTCGCCACCATCTACCCAACCTCCGGTCTACTGCCCACGATCCCCATATCCACCATCTCCTCCATCCTACTCCCCAAACCCACCTCTCAATCACCCCAACTCTCCGCCGCCGCCGCCGCTACCAGTTTATCCTCCCCCTTCCCCTGTTCATACAACCCCGTCGCCGCTTCCTCTTCCATGCATACAACCTCCCCCACCAAATGTTAAATATTCAGGACCGCCGCCCCCTCCACTAACACCTTTATCTCCAATTCTCTATAATCCCCCACCACCGCCGGTCCATTACCAAGCTCCTCCCTCACCTTCACCACCGGTCAGGGTTTATCCGCCGCCGTCCCCAACTCCCCCACCTCCAGTGGTTTACGAAAGCCCGCCACCGCCAGTCGTCTACCAAAGCCCACCCCCGCCTCCAACTCCAGTATACGGAGGCCCACTGCCACCAATCTACGGAGTTCCGTACGCCTCTCCTCCGCCACCACCCTTCTATTAA 2475 55.68 MNPKSHFNPLFHFSLLLLLLLLRLSAALPSVGHGSLSDAEALFIRHRQLLYYRDEWGDRGEQLTVDPSLVFENERIRNAYIALQAWKLAILSDPLNQTANWVGSNVCTYFGVFCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTLPHKFDRLKLLYELDLSNNRFAGKFPDVVLRLPTLKFLDLRFNEFEGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCVPSSLGNMTRLNEIILMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPESFGGLVSLEQLNVANNFLSGKIPESICKLPKLQNFTFSNNFFSGEPPVCLRVPDFSDRRNCLAGRPGQRSTGQCRTFLSRPVDCNAFKCGGSSSSSPSTPFTPPVVSPSSPPSPAGAASPSSPSHSPNAPPAPPLSPHFPPLSPQSPPSPPPSSPSTPSQPSTPSSPSSPSTPSQPSTPPSPSSPSTPSTPSTPPHFPSPSAPSPSSPPRGHAPPSLPSPSSPPQGHTPPSEPSPSSPPHGHTPPGPPSSEPSPPSPSQGHTPSAPPSTSEPSPPSPPQGHTPPAPPSPSEPSPSSPPHVSTPAIPPSPSEPSPSSPPQGHVPPAEPSPPGTSSPPAPPFPVYIPPPPQFPDFPSPPSTQPPVYCPRSPYPPSPPSYSPNPPLNHPNSPPPPPLPVYPPPSPVHTTPSPLPLPCIQPPPPNVKYSGPPPPPLTPLSPILYNPPPPPVHYQAPPSPSPPVRVYPPPSPTPPPPVVYESPPPPVVYQSPPPPPTPVYGGPLPPIYGVPYASPPPPPFY 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25183274 25185748 + CrPI670011_06g018720.1 Cre06g1872 501334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1872 824 Gene3D Ribonuclease Inhibitor 242 371 IPR032675 -
Cre06g1872 824 Gene3D Ribonuclease Inhibitor 79 241 IPR032675 -
Cre06g1872 824 Pfam Leucine rich repeat 291 348 IPR001611 GO:0005515(InterPro)
Cre06g1872 824 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 517 IPR051582 -
Cre06g1872 824 MobiDBLite consensus disorder prediction 398 799 - -
Cre06g1872 824 FunFam Leucine-rich repeat extensin-like protein 5 242 381 - -
Cre06g1872 824 FunFam Leucine-rich repeat extensin-like protein 1 80 241 - -
Cre06g1872 824 MobiDBLite consensus disorder prediction 409 799 - -
Cre06g1872 824 Pfam Leucine rich repeat N-terminal domain 82 114 IPR013210 -
Cre06g1872 824 Pfam Leucine Rich Repeat 174 191 IPR001611 GO:0005515(InterPro)
Cre06g1872 824 SUPERFAMILY L domain-like 88 358 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1119 Cre-Chr6:5071901 Cre06g1872 Cre-Chr6:25183274 3.00E-40 dispersed
Cre06g1120 Cre-Chr6:5075542 Cre06g1872 Cre-Chr6:25183274 6.00E-40 dispersed
Cre06g1872 Cre-Chr6:25183274 Cre11g0691 Cre-Chr11:4011518 1.20E-13 dispersed
Cre05g0603 Cre-Chr5:5374679 Cre06g1872 Cre-Chr6:25183274 5.30E-36 transposed
Cre07g0603 Cre-Chr7:3860520 Cre06g1872 Cre-Chr6:25183274 1.70E-32 transposed
Cre11g0739 Cre-Chr11:4543837 Cre06g1872 Cre-Chr6:25183274 4.20E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1872 - - - 0.0