Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1905 ATGGCTGCAGTTTTTTACTTTACCACCCGTCTCCCATTTTTCCCAATTTCATTTTCCCTGCTTCTTCTTCTTCTTCTTCTTCATCTTCATTCTGTCCAGTCTGAGCCCACCGCCGACAAGGCAGCTCTTCTCGATTTCTTGAACAAAACCCCTCATGAGAGTCGCCTTCAATGGAATGCTTCCGCCTCTGCCTGTACTTGGGTTGGAGTTGTCTGTGATGCGACTCAGTCGTTTGTTTTTGCTCTCCGGTTGCCTGGCGTGGGGCTTGTCGGTCCGATTCCGGTTAATACGCTAGGTCGGTTGAATCGGCTCCGAGTTCTCAGTCTCCGGTCGAATAGAATCTCTGGGGAGTTGCCGGCGGATTTTTCTAATTTGGGATTTCTTCGTAGTCTTTATCTTCAGGACAACGAGCTTTCCGGGGATTTTCCGGTGAGTGTGACTCGGTTGACTCGGTTGACTCGACTTGATCTCTCGTCCAACAATTTCTCTGGTTCGATTCCGTTTTCGGTGAATAATCTGACCCATTTGACTGGGCTTTTCTTGGAGAATAATGGGTTTTCAGGTTCTCTGCCGAGTATTCCTGCGGCTGCGACTAGTCTCACGGGATTCAATGTATCGAATAATAAGCTCAATGGATCCATTCCCGAAACCTTATCGAAATTCTCTGCTTCATCTTTCGCCAATAATTTAGCGCTCTGCGGTGGTCCATTGCCATCGTGCAACCCGTTTTTTCCCTCCCCTGCTCCATCGCCGACGTCAGCCGTGAAACCCCCACAAGTTCCCGTCGAGAAGAAGTCGAAAAAGCTCTCCATCGCTGCCATTGTCGGAATTGTCGTCGGCGCTGCTTTTTTTTTGTTTATATTGCTGTTTTTGCTCCTGTTTTGTCTCCGGAAGCGCGAGCGGAGGCAGCCGGCGAAGCCGCCGACTACAGTGGTTACTACTCGATCTGTTCCGGCGGAGGCAGGTACATCGTCTTCGAAAGACGACATCACCGGCGGATCAGTGGAGACAGAGAAAAACAGATTAGTATTCTTCGAAGGTGGGGTTTACAGCTTCGATTTGGAGGACTTGTTGAGAGCTTCGGCGGAGGTTTTGGGAAAAGGAAGCGTCGGGACGTCGTACAAGGCGGTGCTGGAAGAAGGAACCACCGTGGTAGTGAAGAGATTGAAAGATGTGGTGATGACGAAGAAGGAATTCGAAACGCAAATGGAAGCTCTGGGAAATGTGAAACATGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTTTCCAGAGATGAGAAATTGCTTGTTTCCGATTACATGGCCGCCGGCAGCCTTTCTTCTTCCCTTCACGGAAGCAGAGGATCCGGCCGTACGCCACTTGATTGGGACAACCGGATGAAAATCGCATTAAGCGCAGCAAGAGGATTGGCTCACCTCCACGTGTCGGGAAAGCTCGTCCACGGCAATATCAAATCGTCGAACATCCTCCTCCGCCCCAACCACGACGCCGCCGTCTCCGACTTCGGTTTGAACCCTCTCTTCGGCGCTTCAACGCCGCCCAACCGGATCGCCGGGTATCGCGCGCCGGAGGTTGTTGAAACCCTAAAGGTCACTTTCAAGTCCGACGTGTACAGTTTTGGCGTGTTGTTGTTGGAGCTTCTCACCGGGAAATCACCAAATCAAGCGTCGTTGGGTGAAGAAGGGATTGATCTTCCGCGGTGGGTCCAGTCGGTGGTCAGAGAGGAATGGACGGCGGAGGTTTTTGATGTGGAGTTAATGAGGTACCACAATATCGAAGAAGAGATGGTTCAGCTTTTACAAATTGCCATGGCCTGCGTCGCCACCGTGCCGGACCAGCGGCCGTCGATGCAGGAGGTGGTTCGTATGATTGAGGATTTGAACCGGGTGGAGACCGACGACGGATTACGGCAGTCGTCCGATGACCCATCTAAAGGATCGGACGGCCAGACGCCGCCGCAAGAGTCCAGAACTACCCCACACGGAGCTGGCGGACCACCGTAG 2004 51.95 MAAVFYFTTRLPFFPISFSLLLLLLLLHLHSVQSEPTADKAALLDFLNKTPHESRLQWNASASACTWVGVVCDATQSFVFALRLPGVGLVGPIPVNTLGRLNRLRVLSLRSNRISGELPADFSNLGFLRSLYLQDNELSGDFPVSVTRLTRLTRLDLSSNNFSGSIPFSVNNLTHLTGLFLENNGFSGSLPSIPAAATSLTGFNVSNNKLNGSIPETLSKFSASSFANNLALCGGPLPSCNPFFPSPAPSPTSAVKPPQVPVEKKSKKLSIAAIVGIVVGAAFFLFILLFLLLFCLRKRERRQPAKPPTTVVTTRSVPAEAGTSSSKDDITGGSVETEKNRLVFFEGGVYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVMTKKEFETQMEALGNVKHENVVPLRAFYFSRDEKLLVSDYMAAGSLSSSLHGSRGSGRTPLDWDNRMKIALSAARGLAHLHVSGKLVHGNIKSSNILLRPNHDAAVSDFGLNPLFGASTPPNRIAGYRAPEVVETLKVTFKSDVYSFGVLLLELLTGKSPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVATVPDQRPSMQEVVRMIEDLNRVETDDGLRQSSDDPSKGSDGQTPPQESRTTPHGAGGPP 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25845233 25847672 + CrPI670011_06g019050.1 Cre06g1905 501367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1905 667 Gene3D Ribonuclease Inhibitor 37 192 IPR032675 -
Cre06g1905 667 Gene3D Ribonuclease Inhibitor 193 243 IPR032675 -
Cre06g1905 667 Pfam Leucine Rich Repeat 199 220 IPR001611 GO:0005515(InterPro)
Cre06g1905 667 Pfam Leucine Rich Repeat 103 125 IPR001611 GO:0005515(InterPro)
Cre06g1905 667 Pfam Leucine Rich Repeat 151 173 IPR001611 GO:0005515(InterPro)
Cre06g1905 667 Gene3D Transferase(Phosphotransferase) domain 1 434 645 - -
Cre06g1905 667 FunFam Probable inactive receptor kinase RLK902 36 194 - -
Cre06g1905 667 MobiDBLite consensus disorder prediction 642 658 - -
Cre06g1905 667 SUPERFAMILY Protein kinase-like (PK-like) 363 624 IPR011009 -
Cre06g1905 667 PANTHER OS05G0588300 PROTEIN 20 634 IPR050994 -
Cre06g1905 667 FunFam pollen receptor-like kinase 1 329 433 - -
Cre06g1905 667 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Cre06g1905 667 Pfam Protein tyrosine and serine/threonine kinase 363 623 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1905 667 SUPERFAMILY L domain-like 49 221 - -
Cre06g1905 667 MobiDBLite consensus disorder prediction 627 641 - -
Cre06g1905 667 MobiDBLite consensus disorder prediction 627 667 - -
Cre06g1905 667 Gene3D Phosphorylase Kinase; domain 1 327 433 - -
Cre06g1905 667 ProSiteProfiles Protein kinase domain profile. 359 627 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1905 667 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 638 - -
Cre06g1905 667 MobiDBLite consensus disorder prediction 305 333 - -
Cre06g1905 667 MobiDBLite consensus disorder prediction 307 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1485 Cre-Chr5:19184659 Cre06g1905 Cre-Chr6:25845233 1.90E-15 dispersed
Cre06g1905 Cre-Chr6:25845233 Cre09g2306 Cre-Chr9:42322828 4.80E-125 dispersed
Cre11g0754 Cre-Chr11:4739809 Cre06g1905 Cre-Chr6:25845233 4.60E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64218 PF00069 Pkinase 1.70E-36 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1905 - - - 0.0