Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1911 ATGAGAAATTGTTTATTAATTAAAGCTAAATCACCATTGAAAGGGACAAAGGAGCTTGCTCTGATCTCCTCTGAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTCTGTCTCATGATGATGCCATTAGTGTACTAAAACTTGATGCTTCTTCCACCTGCTGCTACAGTTACCTTGGAGAAATCATTGAGAGAAAAGAAGTTACAAAAAAAAAGAAAAAAGAAAAAAGAGAAATGCCCTACATGCAAATGGAGCCAGAAGAGAAACACGTGATTCCATCTTCTCAAATGGCATTGAAATCCCACCATGGATCAAATGATGGTGAGAAAACTAATTTATGGAAAAGGAAAGGAAGAAGGAGAGCAAAAGGACCTTCCATGGAAGGTTTGAAGCAAAAGGAACTTGATCGAAACCTGGAGTTTCCCTCTTCTTCTTCTTGCAAAAGCGTAACATTTCCAAGAAGGCCAGACTTCGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCAAAAATACCTGAATCAGACATAAGCCATTATAATGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATAATGACCGAGTTGGTCAAACATTATAGAAGCGCAGAGCTGGGGATGCGACTGCCAGTTTATGATGGAGGAAGCAACCTGTACACAGCCGGATTGCTGCCTTTCATATCAAAAGAGTTCACTGTCATTTTGGCTAATGAAGAAGAGGGGGCAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAGATAAAGTTTGTAACTTTGGCTAGCATGCACCAGTTACGAGAATTACTCCATGGCAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATAATTGACATCGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGGCGATCCTTTTATTCTCCTTGTATTAAGAAGCCTCAGCATATTGGGGGTGGTTTGCAAGCATGGCGTGGTTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCACTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCTGTCATTGATTTTGTTGCTCAAATTTTAAACAAAGACGTGTACTCAAGAACATTGTCCGATGCTGATCGTATTAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACACCGAGGAAATGTACGAAGGAAATATCGAATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCAGATGAACATGAAATCTGTAGTTGAATACTTCCAAGAGATGTATGGATATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCTATGGAGGCATGTAAGATACTCAAAGGACAGAGATACACAAAAGGATTGAATGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTATTCAGACTGTTCATGAGAATGCATATGAGGCAGATCCATATGCAAAAGAATTTGGAATCAATATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGACACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTAATAGATGGAAGTGTTGTAAGATACTGGGCTTGCATAAATTTCTCACGCAATGTCCAAGAGAACATTGCTCGTGGTTTCTGTCAACAGCTGGTCCAGATGTGCCAAATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCAGCAAGACCAGAGCAAGTGAAGAAGGCCTTAAAATTTGTATATGGTGCAGTTTATAACAAACATGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAACGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAGTTGGGATTGATATCCCAGTGTTGTCTAACAAAGCACGTCTTCAAGAAGAGCAGACAGTACCTGGCAAATGTGTCACTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTGCGGTCAAGAATTCCACTAGTCAGTGACATACCAACCATAATCTTCGGAGCTGATGTCACCCATCCAGAATCTGGAGAGGATTCTCTTCCATCAATAGCGGCTGTTGTGGCTTCCCAAGATTGGCCAGAGGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCACACCGGGAGGAACTGATTCAAGATTTATTCAAAACATGGAAAGATCCTCACCGGGGCACGGTTGCCGGGGGTATGATAAGGGAGCTTTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATTATATTCTACAGGGATGGGGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATTGTCCAAAAGCGACACCATACCAGACTTTTTGCATCCAATCACAATGATAGGAGTAGCACTGACAAGAGTGGTAATATTTTACCAGGTACTGTCGTGGATTCAAAGATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATCCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCAGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTGGCCGCATACAGAGCTCGATTCTACGTAGACCCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGATCCTGCGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGCTGA 3018 41.65 MRNCLLIKAKSPLKGTKELALISSESSSSSSSSSSCLSHDDAISVLKLDASSTCCYSYLGEIIERKEVTKKKKKEKREMPYMQMEPEEKHVIPSSQMALKSHHGSNDGEKTNLWKRKGRRRAKGPSMEGLKQKELDRNLEFPSSSSCKSVTFPRRPDFGQLGTKCLVKANHFLAKIPESDISHYNVKITPEVTSRKMKKNIMTELVKHYRSAELGMRLPVYDGGSNLYTAGLLPFISKEFTVILANEEEGAATPREREFKVQIKFVTLASMHQLRELLHGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQHIGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQILNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEQMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDIIQTVHENAYEADPYAKEFGINIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVVRYWACINFSRNVQENIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPEQVKKALKFVYGAVYNKHEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRSRIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVDPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 25972240 25978807 + CrPI670011_06g019110.1 Cre06g1911 501373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1911 1005 Gene3D paz domain 352 477 - -
Cre06g1911 1005 Pfam PAZ domain 363 489 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre06g1911 1005 Pfam Mid domain of argonaute 556 632 IPR032473 -
Cre06g1911 1005 ProSiteProfiles Piwi domain profile. 647 968 IPR003165 GO:0003676(InterPro)
Cre06g1911 1005 Pfam Piwi domain 648 966 IPR003165 GO:0003676(InterPro)
Cre06g1911 1005 SMART Piwi_a_2 647 968 IPR003165 GO:0003676(InterPro)
Cre06g1911 1005 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 155 974 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cre06g1911 1005 Gene3D - 537 710 - -
Cre06g1911 1005 FunFam Protein argonaute-2 352 478 - -
Cre06g1911 1005 ProSiteProfiles PAZ domain profile. 360 473 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre06g1911 1005 Pfam Argonaute linker 2 domain 502 545 IPR032472 -
Cre06g1911 1005 FunFam Argonaute 10 537 710 - -
Cre06g1911 1005 CDD Piwi_ago-like 517 966 IPR045246 -
Cre06g1911 1005 Pfam N-terminal domain of argonaute 164 297 IPR032474 -
Cre06g1911 1005 MobiDBLite consensus disorder prediction 99 129 - -
Cre06g1911 1005 Pfam Argonaute linker 1 domain 307 357 IPR014811 -
Cre06g1911 1005 Gene3D - 716 1005 IPR036397 GO:0003676(InterPro)
Cre06g1911 1005 SMART PAZ_2_a_3 363 495 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre06g1911 1005 FunFam protein argonaute 10-like 716 1005 - -
Cre06g1911 1005 SUPERFAMILY PAZ domain 353 512 IPR036085 GO:0005515(InterPro)
Cre06g1911 1005 SMART DUF1785_2 306 358 IPR014811 -
Cre06g1911 1005 SUPERFAMILY Ribonuclease H-like 638 968 IPR012337 -
Cre06g1911 1005 CDD PAZ_argonaute_like 358 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0589 Cre-Chr5:5234117 Cre06g1911 Cre-Chr6:25972240 0.00E+00 dispersed
Cre05g2568 Cre-Chr5:36895504 Cre06g1911 Cre-Chr6:25972240 9.30E-168 dispersed
Cre06g1911 Cre-Chr6:25972240 Cre09g1062 Cre-Chr9:10979770 1.60E-135 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1911 K11593 - csv:101213206 1810.42