Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1931 ATGACGTGCTTGCTACTATGTGCTGCTGGCACAAAGATGGAAGATCAGGGTGGAGAAACTCCACTCCGAATCTGTCCTCGATTTCAGGCTGTGAAAGCTTCGGGTTTTCGGGCAAGAAGATACCCAATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGCCAAAACCCTAGTGACTCTGATCCTCTTCTTGAGAATCAGACCGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACATGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTTTTTGTGGCAAGAGATGTTCTCCTTGTATTTATAGCTGTACAAACTTTAATAGCGGCAATGGGTGGTTATGCGTATATAATGGACAAAGATGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCCAAACATCCTATTCCATTTTATTATTGTATCGGGGTCCTAGCCTTCTTTGTTCTGCTCGGATTCTTCGGGCTCATACTGCATTGTTCCTCCCTTAATAGTAATGATCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATATTGGATTGTTTCCCTGCATCTATGGAAGCCTGCTTTGCACTTGTTATTGTTTTCGTGGTTATCTTTGTAATACTTGGCATAGCTTATGGTTTCCTTGCTGCTACAATGGCTATTCAAAGGATCTGGCAAAGGCATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATGTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAACACTTGAAAATGCTACAGCTTCTGTAA 1044 42.82 MTCLLLCAAGTKMEDQGGETPLRICPRFQAVKASGFRARRYPMKGEVQLESSIGQNPSDSDPLLENQTDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFIAVQTLIAAMGGYAYIMDKDGAFRNSFSDGWDRILSKHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDVHGCYTPPKLEPEHEQHLKMLQLL 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 26472479 26479963 + CrPI670011_06g019310.1 Cre06g1931 501393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1931 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 156 IPR013083 -
Cre06g1931 347 CDD RING_CH-C4HC3_MARCH 92 143 - -
Cre06g1931 347 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 53 346 - -
Cre06g1931 347 SMART ringv_2 91 143 IPR011016 GO:0008270(InterPro)
Cre06g1931 347 MobiDBLite consensus disorder prediction 49 73 - -
Cre06g1931 347 ProSiteProfiles Zinc finger RING-CH-type profile. 84 149 IPR011016 GO:0008270(InterPro)
Cre06g1931 347 Pfam RING-variant domain 92 142 IPR011016 GO:0008270(InterPro)
Cre06g1931 347 SUPERFAMILY RING/U-box 90 147 - -
Cre06g1931 347 MobiDBLite consensus disorder prediction 48 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1526 Cre-Chr4:33941121 Cre06g1931 Cre-Chr6:26472479 7.40E-55 dispersed
Cre06g1931 Cre-Chr6:26472479 Cre07g1824 Cre-Chr7:33593683 5.80E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1931 - - - 0.0