Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1932 ATGGAGACCATTAGAAACAGAGGGGGTTTCAGGGTTTCTGTTTGTGGCCAAGAAGAGCTCGAACAACTCTCCAGAGATGGCAGTCAGTACAGCCTTACCACTGGAATATTGCCTTCTCTTGGCGCTAGAAGCAATCGCAGAGTTAAGCTCCGGCGCTTTATCATTTCGCCTTATGACCGTCGATACAGGATTTGGGAGACTTTTCTGGTTGTTTTGGTGGTATATACTGCTTGGGTCTCGCCGTTCGAGTTTGGATTCCTTAAGAAACCCCAATCACCACTCTCTGTTACAGACAACGTGGTTAATGGATTTTTTGCTGTGGATATTGTTCTCACATTCTTTGTAGCCTACCTTGATAAAACCACCTATTTACTTGTTGATGAACCCAAGAGGATTGCTCTGAAGTATTCAAGGACATGGCTAATCTTTGATGTCATATCCACAATTCCTTCTGAACTTGCACAGAAGATTTCCCCTTCACCTCTTCGTTCTTATGGATTATTCAACATGCTTCGTCTATGGCGTCTCCGAAGAGTCAGTGCTCTGTTTTCCAGACTGGAGAAAGATAGGAACTATAACTACTTTTGGGTTCGATGTGCCAAACTCGTTTGTGTTACTCTCTTTGCAGTTCACTGTGCTGCATGCTTCTATTATCTTCTTGCTGCTCGTTATCGTGACCCAAAAAATACGTGGATTGGAGCATCTATGGAGAACTTTCTGGAACAAAGTTTGTGGATCAGATATGTCACTTCCGTTTACTGGTCTATCACCACCCTAACCACTGTTGGCTATGGCGACTTGCATCCTGTGAATACAAGGGAGATGATTTTTGACATCTTCTACATGCTTTTCAATCTTGGTTTGACAGCATACTTGATTGGAAATATGACCAACTTAGTTGTCCATGGGACCAGTAGAACCAGAAAATTCAGAGATACCATACAAGCTGCATCTAGTTTCGCCCATAGGAATCAACTTCCTGTTCGTTTGCAAGACCAAATGCTTGCACATTTGTGTCTAAAGTTCAGAACTGACTCTGAGGGATTGCAGCAGCAAGAAACTCTTGATTCCTTGCCTAAAGCAATCCGGTCGAGCATTTCACATTATCTTTTCTATTCTCTAGTAGACAAGGTCTACTTGTTTCGGGGTGTTTCAAATGACCTACTTTTTCAACTGGTTTCAGAAATGAAGGCAGAATATTTTCCTCCAAAAGAAGATGTGATCTTACAAAATGAAGCCCCAACAGATTTCTACATTCTTGTCACGGGTGCTGTGGATTTGCTAGTTCTCAAGAATGGAGTTGAACAGCCTGTTGGAGAGGCTAAAACTGGCGATCTTTGTGGAGAGATTGGGGTGTTATGTTATAGACCACAACTGTTTACTGTTCGTACAAAGCGTTTGAGTCAGCTGCTGCGTCTGAATCGGACGGCTTTTCTAAATATTGTTCAATCTAATGTCGGTGATGGGACCATAATCATGAACAATCTTCTTCAGCATTTGAAGGACCTGAAAGACAAGGACCCCATCATGGAAGGAGTTTTGTTGGAGACAGAGAACATGCTGGCTAGAGGCAGAATGGACCTACCACTAAGTCTTTGCTTTGCAACACTTAGAGGAGATGATTTGCTTTTACACCAGCTTTTGAAAAGAGGTCTCGATCCAAACGAATCAGACAATACTGGGAGGACTTCACTTCATATAGCAGCATCAAATGGAAATGAGAACTGTGTGCTTCTATTACTGGACTATGGAGCTGATCCCAACAGTAGAGATTCGGATGGGAGTGTGCCATTATGGGAGGCAATACTAGGTGGCCATGAGGCGGTAGTTCAGCTACTTATAGACAATGGTGCTAACCTTCGATCGGGAGATGTCGGCCACTTTGCGTGTACTGCTGCAGAGCAAAACAACCTCCAGTTGCTCAAGGAGATTATCCGATATGGAGGAGATGTTACGAGTGCCAGGAACAATGGAACGACAGCTTTACATGTTGCTGTTTGTGAGGACAACATTGAGATTGTCAAGTTTCTTCTCAAACAAGGTGCTGATATTGATAAACCAGATGTCCATGGATGGACTCCAAGAGATCTAGCTGACCAACAGGGACATGAAGAAATTAAAATCCTCTTCCAAACAACAAAAGAGTCAAAAACTCAATCTGTCCTTGCAATTCCTGTACCGGAGAAGCAGACAGGGATTCGCTTCCTTGGAAGATTTACAAGCGAGCCTATGATTCGTCCTCAACCTCAGGAAGGAAATGATGGTTCATGGCCGGGTCAATCACGTCCCCGGCGTAGGACTAACAACTTCCATAATTCATTGTTTGGTATCATGTCAGCAGCACACTCAGGGGAGAAAGACATTCCTTTTCCTGATAACCAAACCTGTGGACAGAACTCTGGAACCAACCCTGCAAGGGTGATAATCAGCTGTCCAGAGATCGGCGAAGTTAGCGGGAAGTTGGTGCTGCTTCCGGAAAGCTACAACAAGCTGCTCGAGATTGGTGTCAAGAAATATGGGATTATGGCAACAAAGGTATTGAACAAAGATGGAGCTGCCATTGAAGATATAGAGGTGATTAGGGATGGTGATCATCTTATTTTTGTCAGCGATGGAAGGACCTCATAA 2628 43.65 METIRNRGGFRVSVCGQEELEQLSRDGSQYSLTTGILPSLGARSNRRVKLRRFIISPYDRRYRIWETFLVVLVVYTAWVSPFEFGFLKKPQSPLSVTDNVVNGFFAVDIVLTFFVAYLDKTTYLLVDEPKRIALKYSRTWLIFDVISTIPSELAQKISPSPLRSYGLFNMLRLWRLRRVSALFSRLEKDRNYNYFWVRCAKLVCVTLFAVHCAACFYYLLAARYRDPKNTWIGASMENFLEQSLWIRYVTSVYWSITTLTTVGYGDLHPVNTREMIFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPVRLQDQMLAHLCLKFRTDSEGLQQQETLDSLPKAIRSSISHYLFYSLVDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQPVGEAKTGDLCGEIGVLCYRPQLFTVRTKRLSQLLRLNRTAFLNIVQSNVGDGTIIMNNLLQHLKDLKDKDPIMEGVLLETENMLARGRMDLPLSLCFATLRGDDLLLHQLLKRGLDPNESDNTGRTSLHIAASNGNENCVLLLLDYGADPNSRDSDGSVPLWEAILGGHEAVVQLLIDNGANLRSGDVGHFACTAAEQNNLQLLKEIIRYGGDVTSARNNGTTALHVAVCEDNIEIVKFLLKQGADIDKPDVHGWTPRDLADQQGHEEIKILFQTTKESKTQSVLAIPVPEKQTGIRFLGRFTSEPMIRPQPQEGNDGSWPGQSRPRRRTNNFHNSLFGIMSAAHSGEKDIPFPDNQTCGQNSGTNPARVIISCPEIGEVSGKLVLLPESYNKLLEIGVKKYGIMATKVLNKDGAAIEDIEVIRDGDHLIFVSDGRTS 875
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 26481846 26486832 - CrPI670011_06g019320.1 Cre06g1932 501394
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1932 875 FunFam Potassium channel SKOR 63 301 - -
Cre06g1932 875 Gene3D - 63 301 - -
Cre06g1932 875 FunFam Potassium channel KAT2 368 504 - -
Cre06g1932 875 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SUPERFAMILY Voltage-gated potassium channels 57 301 - -
Cre06g1932 875 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SMART ANK_2a 593 622 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SMART ANK_2a 624 653 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SMART ANK_2a 657 686 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SMART ANK_2a 527 556 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SMART ANK_2a 560 589 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 SUPERFAMILY Ankyrin repeat 531 709 IPR036770 -
Cre06g1932 875 PRINTS EAG/ELK/ERG potassium channel family signature 75 82 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g1932 875 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g1932 875 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g1932 875 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g1932 875 PRINTS EAG/ELK/ERG potassium channel family signature 109 118 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g1932 875 PRINTS EAG/ELK/ERG potassium channel family signature 98 108 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g1932 875 CDD CAP_ED 380 485 IPR000595 -
Cre06g1932 875 Pfam KHA, dimerisation domain of potassium ion channel 806 868 IPR021789 -
Cre06g1932 875 SUPERFAMILY cAMP-binding domain-like 305 500 IPR018490 -
Cre06g1932 875 SMART cnmp_10 380 497 IPR000595 -
Cre06g1932 875 Pfam Ankyrin repeats (3 copies) 532 622 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 Pfam Ankyrin repeats (3 copies) 631 710 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515(InterPro)
Cre06g1932 875 ProSiteProfiles Ankyrin repeat region circular profile. 657 688 - -
Cre06g1932 875 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Cre06g1932 875 PANTHER POTASSIUM CHANNEL AKT1 22 867 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Cre06g1932 875 Gene3D Jelly Rolls 344 506 IPR014710 -
Cre06g1932 875 Pfam Cyclic nucleotide-binding domain 399 485 IPR000595 -
Cre06g1932 875 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Cre06g1932 875 ProSiteProfiles cAMP/cGMP binding motif profile. 380 482 IPR000595 -
Cre06g1932 875 ProSiteProfiles KHA domain profile. 806 875 IPR021789 -
Cre06g1932 875 Pfam Ion transport protein 62 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre06g1932 875 Gene3D - 528 712 IPR036770 -
Cre06g1932 875 MobiDBLite consensus disorder prediction 743 766 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1016 Cre-Chr3:9040361 Cre06g1932 Cre-Chr6:26481846 1.20E-172 dispersed
Cre03g1179 Cre-Chr3:12598224 Cre06g1932 Cre-Chr6:26481846 4.50E-88 dispersed
Cre05g1871 Cre-Chr5:30861547 Cre06g1932 Cre-Chr6:26481846 8.30E-306 dispersed
Cre05g1894 Cre-Chr5:31088506 Cre06g1932 Cre-Chr6:26481846 5.40E-09 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1932 K21867 - csv:101220784 1676.76