Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1975 ATGGCAGAAGAGAAAGAAGGGATTTTGTTCATAATTTTGGGAATTTTAATGATGGGTTTGCGAGTAAATGGTGAGCTGAGAAATGGGTTTTATTCTTTTTCATGTCCAAAAGCAGAGTCTATAGTGAGAAAGACAGTTGAATCGTACTGGAAAACAGATCCTACCATTGCAGCTGGGTTGTTGAGGCTTCATTTTCACGACTGTTTTGTGCAGGGATGTGATGGTTCAGTGTTGATTTCCGGTGGTTTAGCAGAGAGAAATGCTTTGCCAAACCTTGGATTAAGAGGGTTTCAAGTAATAGAAGACGCAAAAGCAGAGCTTGAAGCTGAGTGCCCTGGAGTTGTTTCTTGCGCTGATATTCTTGCTTTGGCTGCTCGTGATGCTGTTGACTTGAGTAATGGGCCAAGTTGGTCAGTGCCCACAGGAAGAAGGGATGGAAGGGTTTCTTCAAAATCCCAAGCCGAAAACTTACCTTCTCCACTCGAGTCCATTGCTGTGCACAAGGAAAAATTTGCACAGAAAGGCCTCGACGAACAAGACCTCGTTACCTTACTCGGAGCACACACGATAGGACAAACGGATTGCCTATTCTTCAGATACCGTCTACACAACTTCACAACAACAGGCAATTCAGATCCAACCATAAACCCATCATTCTTAACAGAGCTAAAAGCACTTTGCCCCAAAGATGGAGATGCAACCAAAAGGGTGGCGTTGGACAAAGACAGCCAATTCAAATTTGACCTTAGTTTCTTCAACAACATTAGAGATGGAAATGGAGTTTTGGAGTCGGACCAAAGGCTTTGGAGTGACGACTCAACCAGAAGCATTCTCCAAAAGTACATCAGCCCCTTAAGAGGACTTTTAGGCCTTAGATTTGACTACAACTTTAGGAAATCAATGATTAAGATGAGTAGCATTGAGGTCAAGACCGGTACGCAAGGAGAGATTAGGAGAAAATGTTCGAGGTTTAATTAG 978 43.05 MAEEKEGILFIILGILMMGLRVNGELRNGFYSFSCPKAESIVRKTVESYWKTDPTIAAGLLRLHFHDCFVQGCDGSVLISGGLAERNALPNLGLRGFQVIEDAKAELEAECPGVVSCADILALAARDAVDLSNGPSWSVPTGRRDGRVSSKSQAENLPSPLESIAVHKEKFAQKGLDEQDLVTLLGAHTIGQTDCLFFRYRLHNFTTTGNSDPTINPSFLTELKALCPKDGDATKRVALDKDSQFKFDLSFFNNIRDGNGVLESDQRLWSDDSTRSILQKYISPLRGLLGLRFDYNFRKSMIKMSSIEVKTGTQGEIRRKCSRFN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27112757 27115911 - CrPI670011_06g019750.1 Cre06g1975 501437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1975 325 SUPERFAMILY Heme-dependent peroxidases 26 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 Gene3D - 29 325 - -
Cre06g1975 325 Gene3D Peroxidase, domain 2 158 304 - -
Cre06g1975 325 FunFam Peroxidase 158 304 - -
Cre06g1975 325 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cre06g1975 325 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 FunFam Peroxidase 29 172 - -
Cre06g1975 325 Pfam Peroxidase 42 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre06g1975 325 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1975 325 PANTHER PEROXIDASE 25-RELATED 20 321 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cre06g1975 325 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Cre06g1975 325 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1309 Cre-Chr6:7047846 Cre06g1975 Cre-Chr6:27112757 3.90E-65 dispersed
Cre06g1975 Cre-Chr6:27112757 Cre09g1536 Cre-Chr9:31092975 4.50E-108 dispersed
Cre06g1975 Cre-Chr6:27112757 Cre06g1977 Cre-Chr6:27127219 8.70E-128 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1975 K00430 - csv:101221881 587.8