Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1977 ATGCAGAGCTTTGTGTGCCACTGGCGGTGTCAGTGTGGGAATGTCAACATTGCAGTGTTGCGAGCGATCAAGACTAGTTTGCTCGTGAAACAACGGGGATCGACTCTGCTATCCCGACGATCGCCGCATCACTCTCCGTCAAGTGAAAGTGTGGACCCCACGGTTCAAACAGGACAACCTGAAAAGATCTATGAAAGAATGGGACAAACAAAAGCCATGTGGTGGAATTTTGTGACAATTCTAGTAATGGTTTTGCCTGTGAAATCTCAGCTGAGTTTTGGGTTTTACTCAAAGTCTTGTCCTAAAGTTGAGTCCATTGTTAGGTCTACCGTTGAGTCTTATTACAAGGCTGATCCCACCATTGCTGCTGGCTTGCTTAGGCTTCATTTTCATGATTGTTTTGTTCAGGGATGTGATGGTTCAGTATTGATAATGGATGAAAATGCTGAAATAAATGCAGGGCCAAATATGGGGTTAAGAGGCTTTGAAGTAGTTGATGATGCAAAATCCCAACTCGAAAGTTTGTGTCCTGGGGTTGTTTCTTGTGCAGATATTCTTGCTTTGGCTACTCGTGATGCTGTAGACTTGAGTGATGGTCCAAGTTGGTCTGTGCCCATGGGCAGAAGGGACGGGACGATTTCTATGCGTTTCCAGGCGGAAGATCTTCCTTCTCCATTTGAGCCCATCGATAACCACATACAAAAGTTTGCAGAGAAAGGCCTTACTGAAGAAGATCTTGTAACCCTAGTTGGTGGTCACACGATCGGGCGAACGGATTGCCAGCTATTCAGTTACCGTCTACAGAACTTCACAAGCACAGGGAATGCAGACCCAACCATAAGCCCATCGTTCTTGACTGAACTGAGAAGCCTGTGCCCTTTGGATGGAGATCCATTCAGAGGAGTGGCCATGGACAAGGGCAGCCAGTTGAAATTCGACAACAGTTTTTACAAGAACTTGATAGATGGGAATGGGGTTTTGGAGTCTGACCAGAGACTTTGGAGCCACCCTTCAACCAGAGACATTGTGAAGAGATATGCTGGGAATTTAAGGGGATTGTTGGGCCTTAGATTTAACTATGAGTTTAAGAAAGCTATGGTTAAGTTGAGTAGCATTGGTGTTAAGACTGGCACGCAAGGGGAGATTAGAAAAGTGTGTTACCAGTTCAATGAGCAGTGA 1179 45.46 MQSFVCHWRCQCGNVNIAVLRAIKTSLLVKQRGSTLLSRRSPHHSPSSESVDPTVQTGQPEKIYERMGQTKAMWWNFVTILVMVLPVKSQLSFGFYSKSCPKVESIVRSTVESYYKADPTIAAGLLRLHFHDCFVQGCDGSVLIMDENAEINAGPNMGLRGFEVVDDAKSQLESLCPGVVSCADILALATRDAVDLSDGPSWSVPMGRRDGTISMRFQAEDLPSPFEPIDNHIQKFAEKGLTEEDLVTLVGGHTIGRTDCQLFSYRLQNFTSTGNADPTISPSFLTELRSLCPLDGDPFRGVAMDKGSQLKFDNSFYKNLIDGNGVLESDQRLWSHPSTRDIVKRYAGNLRGLLGLRFNYEFKKAMVKLSSIGVKTGTQGEIRKVCYQFNEQ 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27127219 27130077 - CrPI670011_06g019770.1 Cre06g1977 501439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1977 392 MobiDBLite consensus disorder prediction 36 60 - -
Cre06g1977 392 ProSitePatterns Peroxidases active site signature. 122 133 IPR019794 GO:0004601(InterPro)
Cre06g1977 392 Pfam Peroxidase 107 349 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 ProSiteProfiles Plant heme peroxidase family profile. 90 390 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 Gene3D Peroxidase, domain 2 223 369 - -
Cre06g1977 392 ProSitePatterns Peroxidases proximal heme-ligand signature. 245 255 IPR019793 -
Cre06g1977 392 PANTHER PEROXIDASE 25-RELATED 85 386 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Haem peroxidase superfamily signature 122 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Haem peroxidase superfamily signature 180 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Haem peroxidase superfamily signature 305 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Haem peroxidase superfamily signature 198 210 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 SUPERFAMILY Heme-dependent peroxidases 90 390 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 FunFam Peroxidase 223 369 - -
Cre06g1977 392 CDD secretory_peroxidase 90 386 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cre06g1977 392 FunFam Peroxidase 94 228 - -
Cre06g1977 392 Gene3D - 94 390 - -
Cre06g1977 392 MobiDBLite consensus disorder prediction 36 57 - -
Cre06g1977 392 PRINTS Plant peroxidase signature 100 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 124 144 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 160 173 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 179 189 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 319 336 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 303 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 198 213 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 364 377 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cre06g1977 392 PRINTS Plant peroxidase signature 244 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0217 Cre-Chr1:1521968 Cre06g1977 Cre-Chr6:27127219 2.70E-59 dispersed
Cre06g1977 Cre-Chr6:27127219 Cre09g1536 Cre-Chr9:31092975 1.50E-105 dispersed
Cre06g1975 Cre-Chr6:27112757 Cre06g1977 Cre-Chr6:27127219 8.70E-128 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1977 K00430 - csv:101214998 592.808