Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1979 ATGCCCAACTTTAAGAAATTTAGAGGCGTTAGGCAACGTCATTGGGGCTCTTGGGTTTCTGAAATTCGACACCCTTTATTGAAGAGAAGGATATGGCTTGGGACGTTTGAGACGGCGGAGGAAGCAGCAAAAGCGTACGACCAAGCTGCGGTTTTGATGAGCGGTCGGAATGCGAAAACCAATTTCCCTACAACTCCTCCCAATGGAGACACCAACAATGTTATTACGACGACCAAGGATTCACCAAAGTGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGTTGTCGTACTCCATCGCCGTCGATGACATGCTTGAGGCTCGACACCGAGAATTCGAATATCGGTGTGTGGCAGAAGCGTGCCGGGCAACGATCCACATCCAACTGGGTTATGACCGTTGAGCTAGGAAACAAGAAGAGCGACAATAACAACGACAACGACAATGCAGATTCTCCTATGATGGCTGTGGTTGCTTCAGATCATCAGTCTCCGATGGCGGTTGCGGAAGTGGCGGAGATTCCATCGGAGTTGGATGAAGAAGAGAAAATGCTAGCATTGCAAATGGTGGAGGAATTGCTTGACATCAACTCTGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 651 46.54 MPNFKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTTPPNGDTNNVITTTKDSPKCLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGVWQKRAGQRSTSNWVMTVELGNKKSDNNNDNDNADSPMMAVVASDHQSPMAVAEVAEIPSELDEEEKMLALQMVEELLDINSDPAEPFEIQQGKDINYL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27189274 27190054 - CrPI670011_06g019790.1 Cre06g1979 501441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1979 216 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1979 216 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1979 216 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1979 216 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Cre06g1979 216 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1979 216 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1979 216 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cre06g1979 216 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 IPR050913 -
Cre06g1979 216 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g1979 216 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1979 Cre-Chr6:27189274 Cre08g1304 Cre-Chr8:26119715 4.10E-25 dispersed
Cre11g0788 Cre-Chr11:5085775 Cre06g1979 Cre-Chr6:27189274 3.40E-60 wgd
Cre05g1858 Cre-Chr5:30739769 Cre06g1979 Cre-Chr6:27189274 1.20E-55 wgd
Cre06g1979 Cre-Chr6:27189274 Cre07g1627 Cre-Chr7:31748616 1.00E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53902 PF00847 AP2 7.20E-12 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1979 - - - 0.0