Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1984 ATGCTTCGGTTCGTTGCTTGTCTTGTCATTTCTTTGCCGGACTTCGTCGCCACATTTTTCCGATTCCATATTAACCGCTCTGCTCCTTCTCCGATTGTTGTGTCGGTTCTTTGTCATCAATTTCCCTGCAACTGTTTTAAAATTTCGCTTTTCTTTTTCTTAGTTGACAATTATCGCGGAGTTTGTTTTCTTCTGGGAAATGCGATCATGAGGCGACTAACTAGAAAAGTTGGGAAGTATGAGGTGGGGCGGACTGTCGGCGAAGGGACGTTCGCCAAGGTTAAGTTTGCATGTAACACGGAGACGGGGGAGGGTGTGGCCATGAAAATTTTGGCCAAAAGTAGCATTCTCAAGCACAAAATGGTAGAACAGATTAAGAGGGAGATATCAATAATGAAAATTGTCAGGCATCCACATATTGTCCGACTGCACGAGGTGTTGGCTAGCCGGACAAAGATATATATTATTCTTGAGTTTGTCTCTGGAGGTGAACTATATGATAAAATAGTTCTTCAAAAGAAGCTTCCAGAAACTGAGTCTAGACGATACTTTCAACAACTGATAGATGCAGTTGCTCATTGTCACAGCAAGGGCGTGTACCACAGGGACCTTAAGCCTGAAAACCTTCTTCTTGATGCTGATGGAAATCTGAAGGTTTCTGACTTTGGACTGAGTGCGCTATCGCAACAAGGTGTTGAGCTACTTCACACCACATGTGGAACTCCTAATTATGTTGCACCCGAGGTACTTGGAGGTCAGGGTTATGACGGTGCAGCTGCAGATATATGGTCATGTGGAGTCATCCTCTATGTACTAATGGCTGGATATCTTCCATTTTCAGAGACAGACCTCCCCACCCTAAATATGAAGATAAATGCAGCGGAGTATTCCTGCCCCTATTGGTTTTCATCTGGTGCGAAGTCCTTGATACAGAAGATCCTTGATCCGAATCCTAAAACTCGGATTCGAATTGAAGAAATTAGAAAAGATCCATGGTTCAGAAGAAACTACATTCCTGCTAAACTAGGAGAAGATGAGGAAGTAAACTTAGATGATGTTCGGGCTGTTTTTGATGACATTGAGGAAGAATATGTCGCTGATCAGTCAGAAAAAAGTGATGACGGTCCTTTGATAATGAATGCATTTGAGATGATAACATTGTCTCAAGGATTAAATCTGTCACCATTATTTGACCGGCGACAGGACTATATAAAGCGGCAAACACGTTTTGTTTCTCGTAAACCTGCAAACTTTATAATGTCTAGCATTGAAGCAGTAGCAGAAGCTATGGGTTTAAATGTCTCCACGCGTCATTTCAAGGCAAGGTTGGAAAGAAGGACTGGACACAGGGTTGCACAATTTGCTGCTGTGCTGGAGATTTATGAGGTGGCACCGTCACTTTTTATGGTGGACGTTCGCAAAGCTGCCGGTGACACACTAGAATATCACAAGTTCTACAAGAATTTCTGTGCTAAGCTTGAAAACATAATCTGGAAACCAACTGAAAGTGTGGGGAACTGA 1521 42.8 MLRFVACLVISLPDFVATFFRFHINRSAPSPIVVSVLCHQFPCNCFKISLFFFLVDNYRGVCFLLGNAIMRRLTRKVGKYEVGRTVGEGTFAKVKFACNTETGEGVAMKILAKSSILKHKMVEQIKREISIMKIVRHPHIVRLHEVLASRTKIYIILEFVSGGELYDKIVLQKKLPETESRRYFQQLIDAVAHCHSKGVYHRDLKPENLLLDADGNLKVSDFGLSALSQQGVELLHTTCGTPNYVAPEVLGGQGYDGAAADIWSCGVILYVLMAGYLPFSETDLPTLNMKINAAEYSCPYWFSSGAKSLIQKILDPNPKTRIRIEEIRKDPWFRRNYIPAKLGEDEEVNLDDVRAVFDDIEEEYVADQSEKSDDGPLIMNAFEMITLSQGLNLSPLFDRRQDYIKRQTRFVSRKPANFIMSSIEAVAEAMGLNVSTRHFKARLERRTGHRVAQFAAVLEIYEVAPSLFMVDVRKAAGDTLEYHKFYKNFCAKLENIIWKPTESVGN 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27287585 27292327 - CrPI670011_06g019840.1 Cre06g1984 501446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1984 506 FunFam Non-specific serine/threonine protein kinase 373 499 - -
Cre06g1984 506 Gene3D Phosphorylase Kinase; domain 1 70 159 - -
Cre06g1984 506 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 74 484 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre06g1984 506 CDD CIPK_C 380 495 - -
Cre06g1984 506 FunFam Non-specific serine/threonine protein kinase 71 159 - -
Cre06g1984 506 ProSitePatterns Protein kinases ATP-binding region signature. 86 118 IPR017441 GO:0005524(InterPro)
Cre06g1984 506 Pfam NAF domain 376 434 IPR004041 GO:0007165(InterPro)
Cre06g1984 506 ProSiteProfiles Protein kinase domain profile. 80 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1984 506 Pfam Protein kinase domain 80 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1984 506 Gene3D Kinase associated domain 1, KA1 373 499 - -
Cre06g1984 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g1984 506 SUPERFAMILY Protein kinase-like (PK-like) 77 373 IPR011009 -
Cre06g1984 506 FunFam Non-specific serine/threonine protein kinase 73 375 - -
Cre06g1984 506 SMART serkin_6 80 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g1984 506 Gene3D Transferase(Phosphotransferase) domain 1 160 341 - -
Cre06g1984 506 ProSiteProfiles NAF domain profile. 374 398 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0117 Cre-Chr5:1347709 Cre06g1984 Cre-Chr6:27287585 6.20E-134 dispersed
Cre06g1984 Cre-Chr6:27287585 Cre06g2099 Cre-Chr6:28784355 5.20E-111 dispersed
Cre06g1984 Cre-Chr6:27287585 Cre08g1128 Cre-Chr8:24453921 2.90E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64220 PF00069 Pkinase 2.40E-72 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1984 - - - 0.0