Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1989 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGCAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACCAGGGCTGCACTATTAAACAAATGA 579 43.52 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27349901 27353058 - CrPI670011_06g019890.1 Cre06g1989 501451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1989 192 CDD HMG-box_SF 120 156 - -
Cre06g1989 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cre06g1989 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cre06g1989 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cre06g1989 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cre06g1989 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2560 Cre-Chr2:38856095 Cre06g1989 Cre-Chr6:27349901 1.20E-46 dispersed
Cre05g2549 Cre-Chr5:36767805 Cre06g1989 Cre-Chr6:27349901 2.60E-30 dispersed
Cre06g1989 Cre-Chr6:27349901 Cre09g2142 Cre-Chr9:40436043 1.20E-41 dispersed
Cre11g0793 Cre-Chr11:5151634 Cre06g1989 Cre-Chr6:27349901 2.60E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53903 PF04690 YABBY 9.80E-70 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1989 K25796 - csv:101215951 364.77