Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g1989 ATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGGCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCCTTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCAAATTACAATTTGTATGGTTGTAGTGGAGGAGATTTTCAAGGTGATTTTGGATCATCATCCAAATGCAATAACAGTAATAAGATGGAAATTCGAGCACCCACTACAATTGCAGCAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGATGATGGTTCTGAGCGTTTAATGACCAGGGCTGCACTATTAAACAAATGA 579 43.52 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGCSGGDFQGDFGSSSKCNNSNKMEIRAPTTIAAEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAALLNK 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27349901 27353058 - CrPI670011_06g019890.1 Cre06g1989 501451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g1989 192 CDD HMG-box_SF 120 156 - -
Cre06g1989 192 Pfam YABBY protein 9 166 IPR006780 GO:0007275(InterPro)
Cre06g1989 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cre06g1989 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cre06g1989 192 PANTHER PROTEIN YABBY 6-RELATED 10 175 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cre06g1989 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g1989 K25796 - - csv:101215951 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2560 Cre-Chr2:38856095 Cre06g1989 Cre-Chr6:27349901 1.20E-46 dispersed
Cre05g2549 Cre-Chr5:36767805 Cre06g1989 Cre-Chr6:27349901 2.60E-30 dispersed
Cre06g1989 Cre-Chr6:27349901 Cre09g2142 Cre-Chr9:40436043 1.20E-41 dispersed
Cre11g0793 Cre-Chr11:5151634 Cre06g1989 Cre-Chr6:27349901 2.60E-71 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2533 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre05g2549 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 2.1e-46 182.6
Cre09g2142 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.0 6.3e-42 167.5
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.2e-54 209.9
Cre09g2142 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.3e-43 173.3
Cre06g1989 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 2.4e-42 169.1
Cre11g0793 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 1.3e-40 163.3
Cre10g0542 . 26 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.1 3.3e-39 158.7
Cre09g2142 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 1.2e-50 196.8
Cre10g0542 . 35 194 C2C2-YABBY Transcription Factor Family AT4G00180 54.3 3.5e-37 152.1
Cre05g2709 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.2 3.6e-39 159.1
Cre06g1989 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.1e-62 236.5
Cre11g0793 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 1.0e-60 229.9
Cre02g2560 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.2e-48 189.9
Cre09g2142 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.7e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53903 PF04690 YABBY 9.80E-70 CL0114 Cre TF