Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2002 ATGAGTGAGAGATCGAGAGGAAAGGAAAAGAGAAAGAAGGGGAAAGAAGTAAAGCAAAGGGTTAGCAGCATAAACCCTGGCGCCGCATCACAGCCGAAGGATTTGTACGGCGGAAAATTTGGCTTCTCTGGTGGTGGCAAAAAAAGTTCTTTTTGTACACACTGCGATGATGGTGATGATGATGCCTGTAATCCCCAACAGCAGCATCAACCCTCCCCAACAAAATTCCTCTCCTTTTCTCTTTCTTCTCCCATCCCTTTTCCCCTCCTCTCTCTGTCTTATCTTCCCCATAATCCTGTGGTTAATGCTTTCCATTTGCTTTCCTTACGCTATGATAATCACAGCTCATTGAAACTGAAAAAACTAGCCCGAAACAGCTTGAAGGGTATGGAGAAAAGGTGTGGTTGTTGGGCTGTTTTGACTCGTACTGTTTCTGGTGTTTGCAAATCCTCTGCTTCTAGAGACTCTCCAAACACCATTCCTCGAACTAGCCTAGTTTATGGTTCTGCTACTGAAACACGGTATTTAAATGCTAGCAACAGGGATCTCTGTACCTTGAATGAAGCTGAGCTGGCCTCTGGTAATGCCAATCCATCAGAATCAGATAACAAAACAGCAAGCAAACTGCTTCAGTTCTCTTATCATGAGCTCAAGGCAGCAACAGGAAACTTTAGACCTGATAGTATTCTTGGGGAAGGTGGATTTGGATTTGTCTTTAAAGGATGGATTGAAGAGAATGGGACAGCCCCTGCAAAACCTGGATCAGGAATTACGGTAGCTGTTAAGAGCTTGAAACTAGATGGTCTTCAAGGCCACAGAGAATGGGTGGCTGAGGTTGCCTTTCTCGGACAACTTCACCATCCAAATCTTGTTAAGCTTATAGGTTACTGTAACGAAGATGATCTACGTTTGCTTGTTTACGAGTTTATGAGCCGTGGAAGTCTTGAGAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCCAATAGGATCAAGATTGCCCTTGGAGCGGCGAAAGGATTGGCCTTTCTTCATAATGGCCCAGTACCTGTAATCTATAGAGATTTTAAGACATCCAATATCTTGCTTGATTCGGATTACAATGCAAAGCTTTCGGATTTTGGTTTTGCGAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAATTGGGACATATGGCTATGCTGCTCCTGAATATGTAATGACAGGGCATCTGACATCGAAGAATGATGTTTATAGCTTCGGTGTTGTGCTTCTTGAGATCGTAACAGGGAGAAGATCCATGGACAAGAAACGTCCGAGTGGTGAACAAAACCTTGTCTCATGGGCTCGACCATATTTAGCTGATAAAAGAAAGATATATCATATAGTGGATCCCCGCTTGGAGTTCAACTATTCCATAAAAGGGGTGCAAAAGGTCTCGCAGCTTGCTTGCAGTTGCCTCAGCAGGGACCCAAAACTACGTCCAACCATGGACGAAGTCGTGAAGATTCTGACTCCACTACAAGATCTCAACGACCTCGCCATTCTAACATCTCACTGCCGCTCATCTTCACAAGGGAGGCGCAAGAAGAAACCCGAAGGCCTAACCTACACCCAAAGCTTCAGAGCTTCTCCATTGAACACTGGAAAGCAGCATGTAAGAACCATAGGTAGAGTAGGAGAGGAAATATTGGATCTTCCTTTGTGGATCTGCATTACCTTGTATGTTACCACCGTTCTTTTTCGATCAGCAATCAAGAATATTAACTTTATACAAAGATGCTTCTAA 1785 43.98 MSERSRGKEKRKKGKEVKQRVSSINPGAASQPKDLYGGKFGFSGGGKKSSFCTHCDDGDDDACNPQQQHQPSPTKFLSFSLSSPIPFPLLSLSYLPHNPVVNAFHLLSLRYDNHSSLKLKKLARNSLKGMEKRCGCWAVLTRTVSGVCKSSASRDSPNTIPRTSLVYGSATETRYLNASNRDLCTLNEAELASGNANPSESDNKTASKLLQFSYHELKAATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKLDGLQGHREWVAEVAFLGQLHHPNLVKLIGYCNEDDLRLLVYEFMSRGSLENHLFRRTIPLPWSNRIKIALGAAKGLAFLHNGPVPVIYRDFKTSNILLDSDYNAKLSDFGFAKAGPQGDKTHVSTRVIGTYGYAAPEYVMTGHLTSKNDVYSFGVVLLEIVTGRRSMDKKRPSGEQNLVSWARPYLADKRKIYHIVDPRLEFNYSIKGVQKVSQLACSCLSRDPKLRPTMDEVVKILTPLQDLNDLAILTSHCRSSSQGRRKKKPEGLTYTQSFRASPLNTGKQHVRTIGRVGEEILDLPLWICITLYVTTVLFRSAIKNINFIQRCF 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 27557887 27562712 - CrPI670011_06g020020.1 Cre06g2002 501464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2002 594 MobiDBLite consensus disorder prediction 1 36 - -
Cre06g2002 594 ProSiteProfiles Protein kinase domain profile. 224 507 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2002 594 FunFam Serine/threonine-protein kinase BIK1 192 309 - -
Cre06g2002 594 FunFam Probable serine/threonine-protein kinase PBL8 310 523 - -
Cre06g2002 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 352 364 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2002 594 Gene3D Phosphorylase Kinase; domain 1 198 309 - -
Cre06g2002 594 ProSitePatterns Protein kinases ATP-binding region signature. 230 262 IPR017441 GO:0005524(InterPro)
Cre06g2002 594 Gene3D Transferase(Phosphotransferase) domain 1 310 520 - -
Cre06g2002 594 PANTHER OS01G0588500 PROTEIN-RELATED 199 507 IPR050823 -
Cre06g2002 594 Pfam Protein tyrosine and serine/threonine kinase 228 503 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2002 594 CDD STKc_IRAK 230 506 - -
Cre06g2002 594 SUPERFAMILY Protein kinase-like (PK-like) 207 514 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0459 Cre-Chr3:3025942 Cre06g2002 Cre-Chr6:27557887 7.40E-121 dispersed
Cre05g2627 Cre-Chr5:37330419 Cre06g2002 Cre-Chr6:27557887 3.40E-130 dispersed
Cre06g2002 Cre-Chr6:27557887 Cre10g2391 Cre-Chr10:37940700 6.00E-119 dispersed
Cre11g0808 Cre-Chr11:5328199 Cre06g2002 Cre-Chr6:27557887 6.90E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64222 PF00069 Pkinase 1.20E-44 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2002 - - - 0.0