Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2072 ATGGCATTTGATCAGAACGCAATTCCCACAGGCTTGCGGCCTTTAAATGTAGCTAGAACTTTAGTTGAAGATCCCCATTTAACCCCGGTCGCTTCTACTGGTCGAAACCCGCAAAGGTTTACCCCCCAGCATCCCTGCGACGTTGCCAGTGCAGACACTGTGCCCGTTCCTGGTAAGGGGAACGTCTCTGATATAGGATTTGTTGAGCTAGGATATCGAAATGTGGTTGCTGGTGTTACTGCATGGTGCCCTCGAATGCCTCCTCCCTTTACACATACTGCAACAATTCCTGCCGTAGGGTTTGGTTACTGCTCTGATCTGAATGTCATGGGCAATCGTGGTGGTGCCAATGCTGTTGAGCTTGCTAGCAGTTGCATGACAGTTGGGATTAATCATAGTACAAATTCGAGTCATCGATTTGGGGGAGGTGGCTTGGAATTTGTGAGCAATAATATCTCAATGGGGTCTGGAGATAGTGCCAATTTATGCAATAAGGTAACTGCCAATGGTGATCAGATTAATAGTGATAGTACTTCTGGATTTAGCTCCCACTTGAGGAATTCGGTTGATGGGAGTGCGGTTGATCAAGTGAGCGAGGAGGGTGGAGATGGTTCCATTTCGAAAAAGAAAGTTAAGTTTATGTGCAGTTTTGGTGGCAAGATTTTTCCTAGACCAAGTGATGGTATGTTGAGATACATTGGAGGCCAAACAAGGATTATAAGTGTTAGGAGAGACGTGACTTTCAATGAGCTTGTACGAAAGATGGTTGATACCTGTGGGCAGGCTGTGGTTATAAAGTATCAGCTCCCCGACGAGGATCTTGATGCTTTAATATCTGTTTCATGCCCTGATGATCTTGATAATATGATGGATGAGTATGAGAAGCTGGTTGAGAGATCTTCAGATGGATCGGCTAAATTGAGGATGTTTCTGTTCTCTGCTTCAGAACTTGACTCTTCAGGTATGGTGGAATTTGGCGATTTGCACGATAGTGGGCAGAGATATGTTGAAACAGTGAATGGGATGTTTGATGGCGTTGGTGGCCGTATTACAAGGAAAGAGAGCTTTGCAAGTGCTACCTCAACTCAAAATTCTGACTTAAGTGGGACTGAGGCGATGGATATCGCAAATAATGATCTAGGGGGGGTTGTGAGTGGGCCTCCATCCACAACACTGTCCTTACCTGGAGGAAATTTAGGTACTGCAGTTGCTATTGGCCCTGGATTAGTGAAAGTAGATCCTGTCTCTGCAGTTTTTGTAGACGCCTCTGCTGTTCCATCAAGTATTCCTGTGCTTAACTCTGTTCCTCCTGAAGCTTCTTCGCAGCCTGAGGCGGAGTTGGGAAGGTCTGTGCCTGTTACTCTAATGCAGCAGCAACCAGGTATTGACTTTCCTCCACCTGTGTCTCAATTGCAGCCTACTGGTGATCCTCGGCAAGCAGCATGTGCGGACTTTGTACAATTTCGTCCACAACTTGGCTTTTCAAACTCCCATCATTTAGGGGCATCTGGGTCTATGTTTATACAACAGCCAAATACTCTTGGAATTACCCCTAATCAGTTTGTCCCTGCAGTTCACATGACGATGGCTCCCTCTTCTTCTCACCTCAGTACTATGCCAAATACCTATCAATCGTTGGTTCAATATCCACGATCCCAGATGGATTATTTTTCCAACGCAAGCACATTTGGTCCAAGGTTTGTCCAGCTATCTGCAGAACAAGGCTACAACTCACTCCAGGTTCCAGCTCCTCCAGTATCAGTAGGGGTTGGGTTTGGTTTACATCAGGTACCACAGTCTGATCAGACAGTTACGTCTGATGAATTGGTATCCCATCATCGGGCAACTTTTTCTGAGAAGATCGAGAGGTTGGATGGCTGTTACTTCTGCCAGAAAGCAGTGCCACATGCTCATTCCAATTCTCCGTTGCAGGATCAAAGAGAAAATTTGACGAACCCTGTATCTGATTCAAAGTTCTCGTATTACAGTCATCACCCTGAAGATCATTTAACAGCCCATCCAATGAAAAATATTACAGAAACTGGAGCTTTGAGGCAACAAACTACTGAACATGGTGTTGGAATGCAAACCAGGATCTTTAATCCCATGGATCCAGAAGTTGAAAAACCTTCAGTGGAAGCTATTAGCTTCCCACATTGTATTGAGGGTCAACATGAGAATGACAACACTCTTAAAGATCAGCATAATCTTGATCATGGTAGGATCTCAGCTCTGCAGGGTGCTCTTGGGAGGCAAGGTGATATTCGGTCACCCCATGTTGCTGTTGTAGAACAGATTTGTCAGTCTGGGGAAGTTGATACTCTCCAGCACCACTATGTAGCTGTAGAGAATCAGTTCCGTCCAAATTTAGTCCTGGATAAACACGATGTTTGCTTTGTAGGTGCTCCTATTCTTGCTTCAGAGTACAACACTCACGAAAATCCAAATGAGTACTCTAATAGTCATCATGGCATTATTGCAAACCAAAATGCCACCCACACTGGAATTTGTTACGACCATCTCAGACCAATTGTTGGAAATTTGGAAAGTTCAAGTACATGCCCAACTGATATTTGTGCTAATTTGGATCACTGCAAATCACCCATTGAGAGAACTAGGAAGGAGGACAATTTTGGCAGCTGTTCACAACCAGTCTCAGAGAGGGAAGTTCTACTAGATAACAACTTTGTAAAGCCAATGGTGGTTCTCGACCCAAATAACGTAAAGCCAACTACTTTTGCTTGCTCTTCATCAGAGGTTCCCTATTTGATGAATGAACGACCTGTTGAGTCCAGTGAAGTGGCACAACCTCCTGTCAGGGGCTCTCCCGGAACATTACCACAAGCTGAAAATGGGATGCAACATTTAGAATCCAATGAAGTCTGTCATAGCAGAAATCCCCACTTATTTGACATGAAGACTGAAGATATAAACAATGGAGTCCCTGTTTCTGCTGAGTGGAAGGAGGACACTTCTCTATTGGAAACTAGGATGGTATCTGGTGATGTTGAATCCGTTTCTTTGCCTATCAGGACTGGAAATATGCAGGACACTGCAAATTCACTCTTCAGTAATCAGGATCCTTGGAACTTGCAACATGATGCTCATTTTTTGCCGCCTAGACCAACTAAAATTCAACCGAGGAATGAAGCCCTTGCCTCCAGGGAACCCTTGACAGAGAGTCCTTTCAGGAATATTGGTGAACCAAATGTTGAAACAATTCTGGATGATGGAGTATGTCACCCATTGGTTAACTCAAACAAGGGTTCTTCAGAGGAACAAATTAGGAAAGATCTTCAAGCTGTTGCTGAGGGTGTAGCTGCTTCTGTTCTTCAGTCGGCTCAATCCTCCAGCTCTGAATTGCATGAAAGAATTGATCCAGTTTGTGAGACTATCACCGAAGGAGATGTTCAAAATAATGATGATGGCAGGACAAGACATTCAGAAAAACCAAACCTTGGTTTTCCAATGTCAGAAGGCTTTGGCCGCTTGCAGGTAATAAAGAATAGTGACCTTGAAGAACTAAGAGAATTAGGTTCTGGCACTTTTGGCACTGTTTATCATGGAAAATGGAGGGGGACTGATGTTGCTATCAAACGAGTCAATGATAGGTGTTTTGCTGGGAAACCATCTGAACAAGATCGCATGAGAGAGGACTTTTGGAATGAAGCAATTAAGCTGGCTGATTTGCACCACCCAAATGTGGTTGCTTTTTACGGTGTTGTGCTTGATGGCCCTGGGGGCTCTGTGGCAACAGTAACAGAATATATGGTTAATGGCTCGCTCAGAAATGCTTTGTTGAAGAATGAAAGGAGTCTTGACAAGCGTAAGCGTCTCTTGATTGCTATGGATGCAGCTTTTGGAATGGAATACCTGCACAGAAAGAATATAGTGCACTTTGATTTGAAAAGTGATAATCTGCTGGTCAACCTTCGAGATCCTCATCGCCCAATATGCAAGGTTGGTGACTTGGGCCTATCGAAGGTGAAACGTCAGACATTGATATCAGGTGGTGTGCGGGGAACACTTCCATGGATGGCACCCGAGCTTTTGAATGGGAGCAGCAATATGGTGTCCGAGAAGGTTGATGTGTTCTCCTTTGGTATTGTCTTGTGGGAGCTCCTCACTGGAGAAGAGCCCTACGCAAATTTGCATTATGGGATTATCATAGGTGGCATAGTAAGCAACACGTTGCGACCTGAAGTTCCAGAATCTTGTGATCCAGAATGGAGGTCACTGATGGAGAGATGCTGGTCATCTGAGCCGTCAGAGAGGCCAAGCTTCACTGAAATTGCACATGAATTGCGGTCCATGGCTACTAAGGCATATTGCTTCGCTGATGGCCCTTTCCTCTTCGCCTATGTTCCAGAATTGCGAAATACAAGTATGTTGCTCAAGTTTTGGGATTCGGTAGATATTTGA 4422 44.6 MAFDQNAIPTGLRPLNVARTLVEDPHLTPVASTGRNPQRFTPQHPCDVASADTVPVPGKGNVSDIGFVELGYRNVVAGVTAWCPRMPPPFTHTATIPAVGFGYCSDLNVMGNRGGANAVELASSCMTVGINHSTNSSHRFGGGGLEFVSNNISMGSGDSANLCNKVTANGDQINSDSTSGFSSHLRNSVDGSAVDQVSEEGGDGSISKKKVKFMCSFGGKIFPRPSDGMLRYIGGQTRIISVRRDVTFNELVRKMVDTCGQAVVIKYQLPDEDLDALISVSCPDDLDNMMDEYEKLVERSSDGSAKLRMFLFSASELDSSGMVEFGDLHDSGQRYVETVNGMFDGVGGRITRKESFASATSTQNSDLSGTEAMDIANNDLGGVVSGPPSTTLSLPGGNLGTAVAIGPGLVKVDPVSAVFVDASAVPSSIPVLNSVPPEASSQPEAELGRSVPVTLMQQQPGIDFPPPVSQLQPTGDPRQAACADFVQFRPQLGFSNSHHLGASGSMFIQQPNTLGITPNQFVPAVHMTMAPSSSHLSTMPNTYQSLVQYPRSQMDYFSNASTFGPRFVQLSAEQGYNSLQVPAPPVSVGVGFGLHQVPQSDQTVTSDELVSHHRATFSEKIERLDGCYFCQKAVPHAHSNSPLQDQRENLTNPVSDSKFSYYSHHPEDHLTAHPMKNITETGALRQQTTEHGVGMQTRIFNPMDPEVEKPSVEAISFPHCIEGQHENDNTLKDQHNLDHGRISALQGALGRQGDIRSPHVAVVEQICQSGEVDTLQHHYVAVENQFRPNLVLDKHDVCFVGAPILASEYNTHENPNEYSNSHHGIIANQNATHTGICYDHLRPIVGNLESSSTCPTDICANLDHCKSPIERTRKEDNFGSCSQPVSEREVLLDNNFVKPMVVLDPNNVKPTTFACSSSEVPYLMNERPVESSEVAQPPVRGSPGTLPQAENGMQHLESNEVCHSRNPHLFDMKTEDINNGVPVSAEWKEDTSLLETRMVSGDVESVSLPIRTGNMQDTANSLFSNQDPWNLQHDAHFLPPRPTKIQPRNEALASREPLTESPFRNIGEPNVETILDDGVCHPLVNSNKGSSEEQIRKDLQAVAEGVAASVLQSAQSSSSELHERIDPVCETITEGDVQNNDDGRTRHSEKPNLGFPMSEGFGRLQVIKNSDLEELRELGSGTFGTVYHGKWRGTDVAIKRVNDRCFAGKPSEQDRMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALLKNERSLDKRKRLLIAMDAAFGMEYLHRKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKVKRQTLISGGVRGTLPWMAPELLNGSSNMVSEKVDVFSFGIVLWELLTGEEPYANLHYGIIIGGIVSNTLRPEVPESCDPEWRSLMERCWSSEPSERPSFTEIAHELRSMATKAYCFADGPFLFAYVPELRNTSMLLKFWDSVDI 1473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28489803 28497191 + CrPI670011_06g020720.1 Cre06g2072 501534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2072 1473 CDD STKc_MAP3K-like 1178 1435 - -
Cre06g2072 1473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1297 1309 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 SMART PB1_new 225 314 IPR000270 GO:0005515(InterPro)
Cre06g2072 1473 SUPERFAMILY Protein kinase-like (PK-like) 1163 1433 IPR011009 -
Cre06g2072 1473 Gene3D Phosphorylase Kinase; domain 1 1165 1259 - -
Cre06g2072 1473 SUPERFAMILY CAD & PB1 domains 226 318 - -
Cre06g2072 1473 CDD PB1_UP2 214 312 - -
Cre06g2072 1473 Pfam PB1 domain 230 313 IPR000270 GO:0005515(InterPro)
Cre06g2072 1473 Pfam Protein tyrosine and serine/threonine kinase 1174 1435 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 MobiDBLite consensus disorder prediction 1134 1155 - -
Cre06g2072 1473 ProSiteProfiles Protein kinase domain profile. 1172 1436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 PRINTS Tyrosine kinase catalytic domain signature 1291 1309 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 PRINTS Tyrosine kinase catalytic domain signature 1362 1384 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 PRINTS Tyrosine kinase catalytic domain signature 1406 1428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 PRINTS Tyrosine kinase catalytic domain signature 1254 1267 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 Gene3D - 232 314 - -
Cre06g2072 1473 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 230 314 - -
Cre06g2072 1473 Gene3D Transferase(Phosphotransferase) domain 1 1260 1446 - -
Cre06g2072 1473 SMART serkin_6 1172 1443 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2072 1473 ProSitePatterns Protein kinases ATP-binding region signature. 1178 1209 IPR017441 GO:0005524(InterPro)
Cre06g2072 1473 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1165 1259 - -
Cre06g2072 1473 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1260 1447 - -
Cre06g2072 1473 PANTHER SERINE-THREONINE PROTEIN KINASE 173 1438 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2072 Cre-Chr6:28489803 Cre11g1679 Cre-Chr11:28162684 3.30E-142 dispersed
Cre08g1706 Cre-Chr8:29411101 Cre06g2072 Cre-Chr6:28489803 2.90E-24 dispersed
Cre06g2072 Cre-Chr6:28489803 Cre03g0716 Cre-Chr3:6040361 1.50E-147 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64224 PF07714 PK_Tyr_Ser-Thr 7.00E-60 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2072 - - - 0.0