Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2086 | ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGGATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCCATAATGCAGACAACACAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGGGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGACCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGAAGTGCAATGCCAGGCAGGGGTAGTTGGCAGCGTTATTCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGGGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATGATGAAACGGGTTGAAAACATTAACATCTTCAATGTTGATAAAATGAAACATAATGAGGCTGAGCATAAAAATGAAGAGAAACACATAACAGAACAGGACGAATTCTCCATCAAGGAAAGCTCCCTCTGTCTTCAATCTCTGTATGAGGTGAGGAAAGATTGGAGCTTGAGGGTTACATCGAGGCGATATGAAATAGCTCCAATTTCGTCGAGAGAGTAG | 2235 | 43.67 | MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTHNADNTKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSTYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSDPSTIGNISVDFSSRSAVSAPLLDSREVQCQAGVVGSVIQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQGYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSMMKRVENINIFNVDKMKHNEAEHKNEEKHITEQDEFSIKESSLCLQSLYEVRKDWSLRVTSRRYEIAPISSRE | 744 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28618326 | 28622550 | + | CrPI670011_06g020860.1 | Cre06g2086 | 501548 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2086 | 744 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 24 | 393 | IPR045279 | GO:0009736(InterPro) | |
Cre06g2086 | 744 | Pfam | Myb-like DNA-binding domain | 213 | 263 | IPR001005 | - | |
Cre06g2086 | 744 | CDD | REC_typeB_ARR-like | 26 | 140 | - | - | |
Cre06g2086 | 744 | SUPERFAMILY | Homeodomain-like | 209 | 268 | IPR009057 | - | |
Cre06g2086 | 744 | SMART | REC_2 | 24 | 136 | IPR001789 | GO:0000160(InterPro) | |
Cre06g2086 | 744 | Gene3D | - | 207 | 270 | - | - | |
Cre06g2086 | 744 | Gene3D | - | 24 | 178 | - | - | |
Cre06g2086 | 744 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 208 | 267 | IPR017930 | - | |
Cre06g2086 | 744 | FunFam | Two-component response regulator | 207 | 270 | - | - | |
Cre06g2086 | 744 | SUPERFAMILY | CheY-like | 23 | 149 | IPR011006 | - | |
Cre06g2086 | 744 | MobiDBLite | consensus disorder prediction | 147 | 208 | - | - | |
Cre06g2086 | 744 | ProSiteProfiles | Response regulatory domain profile. | 25 | 140 | IPR001789 | GO:0000160(InterPro) | |
Cre06g2086 | 744 | MobiDBLite | consensus disorder prediction | 157 | 177 | - | - | |
Cre06g2086 | 744 | PIRSF | RR_ARR_type-B | 1 | 696 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cre06g2086 | 744 | Pfam | Response regulator receiver domain | 26 | 134 | IPR001789 | GO:0000160(InterPro) | |
Cre06g2086 | 744 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 211 | 264 | IPR006447 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g1238 | Cre-Chr6:6289075 | Cre06g2086 | Cre-Chr6:28618326 | 3.30E-82 | dispersed | |
Cre06g2086 | Cre-Chr6:28618326 | Cre11g0834 | Cre-Chr11:5529015 | 3.50E-148 | dispersed | |
Cre05g0965 | Cre-Chr5:8880246 | Cre06g2086 | Cre-Chr6:28618326 | 2.10E-37 | transposed | |
Cre05g1811 | Cre-Chr5:30211195 | Cre06g2086 | Cre-Chr6:28618326 | 7.70E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53905 | PF00072 | Response_reg | 1.80E-25 | CL0304 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2086 | K14491 | - | csv:101213687 | 1210.28 |