Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2086 ATGACCGTGGAGGGTCATTCTGTTGCTGCAGTTGGTGATGATGGCGCCACTGATCATTTTCCTATTGGGATGCGAGTTCTTGCTGTCGACGATGACCCTATTTGTCTCAAAGTACTCGAGACTCTCCTTCGTAAATGTCAATATCATGTTACGACGACGAAGCAATCCATTGAGGCTTTGAAGATGTTGAGAGAAAATAGAAACAAATTTGACTTGGTTATCAGTGATGTGAACATGCCTGATATGGATGGTTTCAAGCTTCTTGAATTGGTGGGGCTTGAAATGGACCTACCTGTAATCATGTTATCAGCACATAGTGATACTGAGCTTGTTATGAAGGGGATTGCGCATGGTGCGTGTGACTATCTGTTGAAACCAGTTCGGATCGAGGAGTTGAAAAACATTTGGCAGCATGTGATTCGGAGAAAGAAGCTTGAACCAAAGGCAAAAAACAAGGTCCCTAATCAAGATAAGGTTCGAAATGGAGGCAATGAAGGCGAACAAGGTTTCTCACCAACCCATAATGCAGACAACACAAAATTCAATAGGAAGCGGAAGGACCAAGATGATGATGAGGACGAAGAAGGAAAGGAGAATGGGCTTGATTGTGACGACCCCTCGAACCAGAAGAAGCCTAGGGTAGTGTGGTCAGTTGAGTTGCACCGGAAGTTTGTTTCAGCGGTTAATCAGTTGGGTCTTGAAAAGGCTGTGCCGAAAAAAATCCTGGATCTGATGAATGTTGAAGGACTTACCAGAGAAAATGTGGCAAGTCATTTGCAGAAATATAGGCTTTACCTGAAAAGAATCAGCAATGTGGCATCCCAACAAGCTAACATGGTTGCTACATTTGGGAGTAAAGATGGCACTTACATGCGCCTCGGTTCACTAGATGGATATGGAGAGTTACATGGCTTTGCAGGATCAGGGCGGCTTCCAAACTCTTCATTATCCTCTTATTCACCTGTTGGGATGCTTGGAAGATTGAACTCCCCGGCTGGAATGAGCCTGCGTGGAATCACTTCTTCTGGACTGATCCAGCAAAGCTCCCAAAATTTGAACTGTGCTATAAATAACCTTGGCAAGCTCCAACCAACTACTATGTTGCCTCCTAACCAAACTACTAATCTACTGCAAGGAATTCCAACGTCACTCGAGATCGGCCAGTTGCAACACAGCAAGTCCACCACTCCCATTGGGGACTTCAATACAATGAATGAGACATCCGGGTTTGGAGTTCCCAACAGTTTTTCTGATACGAGAGCAAATATTGGAAATTCAACCTATTCGGTTTCTCCTGCCCCATTGATGTTACAAGGAACAATGCCGACATATGGAAACCAGACTTCCCTTAGAGTGGATCCGCTAAATGGAGAAACTTTTGACATAGACATTGGCGGTTCAAATTTTTTGGATCCTGATCCTTCTAGTGGAAACTGGCAGGGAGCCGCACAACATTTGTCTAGATTCTCAACAACTTCTTTGACCCCCAATGAAGCTTATTCCAATGATCAATTGCATGCAATGAACTCGAGCATTTCTTCCGACCCCTCAACGATCGGGAACATCTCGGTTGATTTTTCCTCTAGAAGTGCAGTTTCAGCTCCCTTACTGGATTCAAGAGAAGTGCAATGCCAGGCAGGGGTAGTTGGCAGCGTTATTCAAGCTGTGAATACCATGCCAAAGCAGAGATGGGAAGAACATAAGCATGATTACAGTCGAAATGTGCAGCATAATCTTGGTGCAATCAATTCTCTAGTTTCTAGCAACGGGACTCTAACCCCATTAAGCCAGGGTTACAATCAGAACGGTCTAGTATGTGACAGAAAGGTCGGTTCATCTTTGATAGTCCCATCAAGTGCTGCTCCACTATCCTTCCCTCAACATAGTATGGTTGAAAAATTGGGTCTGAACACAAAGACGAATGCGGATGGAAACTACCTTTTGAATCAGACAAAGTCACACGATGGATCAATTCAAGGCAATTTCGAGTCCTTGGATGATATAATGAATTCGATGATGAAACGGGTTGAAAACATTAACATCTTCAATGTTGATAAAATGAAACATAATGAGGCTGAGCATAAAAATGAAGAGAAACACATAACAGAACAGGACGAATTCTCCATCAAGGAAAGCTCCCTCTGTCTTCAATCTCTGTATGAGGTGAGGAAAGATTGGAGCTTGAGGGTTACATCGAGGCGATATGAAATAGCTCCAATTTCGTCGAGAGAGTAG 2235 43.67 MTVEGHSVAAVGDDGATDHFPIGMRVLAVDDDPICLKVLETLLRKCQYHVTTTKQSIEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTELVMKGIAHGACDYLLKPVRIEELKNIWQHVIRRKKLEPKAKNKVPNQDKVRNGGNEGEQGFSPTHNADNTKFNRKRKDQDDDEDEEGKENGLDCDDPSNQKKPRVVWSVELHRKFVSAVNQLGLEKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKRISNVASQQANMVATFGSKDGTYMRLGSLDGYGELHGFAGSGRLPNSSLSSYSPVGMLGRLNSPAGMSLRGITSSGLIQQSSQNLNCAINNLGKLQPTTMLPPNQTTNLLQGIPTSLEIGQLQHSKSTTPIGDFNTMNETSGFGVPNSFSDTRANIGNSTYSVSPAPLMLQGTMPTYGNQTSLRVDPLNGETFDIDIGGSNFLDPDPSSGNWQGAAQHLSRFSTTSLTPNEAYSNDQLHAMNSSISSDPSTIGNISVDFSSRSAVSAPLLDSREVQCQAGVVGSVIQAVNTMPKQRWEEHKHDYSRNVQHNLGAINSLVSSNGTLTPLSQGYNQNGLVCDRKVGSSLIVPSSAAPLSFPQHSMVEKLGLNTKTNADGNYLLNQTKSHDGSIQGNFESLDDIMNSMMKRVENINIFNVDKMKHNEAEHKNEEKHITEQDEFSIKESSLCLQSLYEVRKDWSLRVTSRRYEIAPISSRE 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28618326 28622550 + CrPI670011_06g020860.1 Cre06g2086 501548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2086 744 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 393 IPR045279 GO:0009736(InterPro)
Cre06g2086 744 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Cre06g2086 744 CDD REC_typeB_ARR-like 26 140 - -
Cre06g2086 744 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Cre06g2086 744 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Cre06g2086 744 Gene3D - 207 270 - -
Cre06g2086 744 Gene3D - 24 178 - -
Cre06g2086 744 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Cre06g2086 744 FunFam Two-component response regulator 207 270 - -
Cre06g2086 744 SUPERFAMILY CheY-like 23 149 IPR011006 -
Cre06g2086 744 MobiDBLite consensus disorder prediction 147 208 - -
Cre06g2086 744 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Cre06g2086 744 MobiDBLite consensus disorder prediction 157 177 - -
Cre06g2086 744 PIRSF RR_ARR_type-B 1 696 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cre06g2086 744 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Cre06g2086 744 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g1238 Cre-Chr6:6289075 Cre06g2086 Cre-Chr6:28618326 3.30E-82 dispersed
Cre06g2086 Cre-Chr6:28618326 Cre11g0834 Cre-Chr11:5529015 3.50E-148 dispersed
Cre05g0965 Cre-Chr5:8880246 Cre06g2086 Cre-Chr6:28618326 2.10E-37 transposed
Cre05g1811 Cre-Chr5:30211195 Cre06g2086 Cre-Chr6:28618326 7.70E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53905 PF00072 Response_reg 1.80E-25 CL0304 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2086 K14491 - csv:101213687 1210.28