Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2093 ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCCCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCACTTCGATCCCGCCGCCGCCGCTTCCCACGACGACTTTCTCGAGCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAGCCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGCGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTCATGGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA 1269 56.03 MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP 422
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 28704313 28707371 + CrPI670011_06g020930.1 Cre06g2093 501555
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2093 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 364 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cre06g2093 422 MobiDBLite consensus disorder prediction 295 330 - -
Cre06g2093 422 SMART finulus 223 272 IPR011598 GO:0046983(InterPro)
Cre06g2093 422 MobiDBLite consensus disorder prediction 381 422 - -
Cre06g2093 422 MobiDBLite consensus disorder prediction 173 212 - -
Cre06g2093 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983(InterPro)
Cre06g2093 422 Gene3D - 211 274 IPR036638 GO:0046983(InterPro)
Cre06g2093 422 MobiDBLite consensus disorder prediction 304 330 - -
Cre06g2093 422 MobiDBLite consensus disorder prediction 168 220 - -
Cre06g2093 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 277 IPR036638 GO:0046983(InterPro)
Cre06g2093 422 MobiDBLite consensus disorder prediction 28 49 - -
Cre06g2093 422 FunFam Transcription factor bHLH66 214 279 - -
Cre06g2093 422 Pfam Helix-loop-helix DNA-binding domain 222 267 IPR011598 GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1905 Cre-Chr3:36090427 Cre06g2093 Cre-Chr6:28704313 4.00E-34 dispersed
Cre06g2093 Cre-Chr6:28704313 Cre09g0707 Cre-Chr9:6830245 1.70E-46 dispersed
Cre06g2093 Cre-Chr6:28704313 Cre02g2023 Cre-Chr2:33718261 1.00E-80 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53906 PF00010 HLH 1.60E-09 No_clan Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2093 - - - 0.0