Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2093 | ATGCAGCCCTGTAGCAGAGAAATGCAAACCCTCAACTCTCTCTTAAACCACGCCCAAATCTCCCTCCAAGACCTCCACGCCGACCCCCACCACCACCACAACCACCATTTGAATCCCCCACCGCCGCAGATCCCGCCGTCTCACCTCCATCACTTCGATCCCGCCGCCGCCGCTTCCCACGACGACTTTCTCGAGCAAATGCTCAACACAATCCCTTCCTGTTCCTGGCCTGACCTCAACCCTTCAAACCCTAAGTCCCCTTGGGACCTTAACCCCATCAATAAGCCCTCTAGAGATATCTCCGACGATCCTCATCAGAATCACATCACTGCCACATCTCCCGCCGCCAAAGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCCGGTTCTACCGGAAATGGCGTCGCGGACCATGGCCTCCCTCCTATGCCTCTCTCCCTTGGAAATGCTGACTTGGACCGCTCCCAAAACGACGTTGTCGATGGATCCTGCTTCCGCCCACCCAACTCGGGAGGTTCTCTTCAATCGCATAGTTTCGGAGCTCCGGCAAACGTGATGAATCAAACTCCCGGCGGTGGGTCTGCCGGAGTTTCTCAATCTCAGCCAAAGCAAAAGGTCAGAGCTCGCAGAGGCCAAGCCACTGACCCCCACAGTATCGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCCCTGCAAGAACTCGTTCCCAATGCGAACAAGACAGACAAAGCTTCAATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTACAAGTCAAGGTTCTGAGCATGAGCAGGTTGGGGGGTGCAGCTGCTGTGGCTCCTCTCGTTGCTGACGTCTCCTCTGAGGGGGGCGGTGAGTGTATGCAAGGGAGTGGGGCCCAAGCTGGCCGGAATTCAAACAACGGCAGCGGCGGAAACCAAACGGCGTCGTCCAACGACAGCATGACGGTGACGGAGCAGCAAGTGGCGAAGCTGATGGAGAAAGATATGGGATCGGCGATGCAATATTTGCAAGGAAAAGGGCTGTGTCTTATGCCGATCTCTCTGGCGACGGCCATTTCCACGTCCACGTGTCACTCCAGGAACCCCTTGATTAACGGCGGTAGTCAGCTTCCGGTCATGGGATCGAACGGCGAAGGGCCATCCTCGCCGAGCATGTCGGTGCTGACTGTGCAGTCGACGAGTATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTTTCAAAGCCGTGA | 1269 | 56.03 | MQPCSREMQTLNSLLNHAQISLQDLHADPHHHHNHHLNPPPPQIPPSHLHHFDPAAAASHDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHITATSPAAKAAVMLQQQLLLSRGMSGSTGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSHSFGAPANVMNQTPGGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGRNSNNGSGGNQTASSNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLINGGSQLPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28704313 | 28707371 | + | CrPI670011_06g020930.1 | Cre06g2093 | 501555 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2093 | 422 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 65 | 364 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Cre06g2093 | 422 | MobiDBLite | consensus disorder prediction | 295 | 330 | - | - | |
Cre06g2093 | 422 | SMART | finulus | 223 | 272 | IPR011598 | GO:0046983(InterPro) | |
Cre06g2093 | 422 | MobiDBLite | consensus disorder prediction | 381 | 422 | - | - | |
Cre06g2093 | 422 | MobiDBLite | consensus disorder prediction | 173 | 212 | - | - | |
Cre06g2093 | 422 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 217 | 266 | IPR011598 | GO:0046983(InterPro) | |
Cre06g2093 | 422 | Gene3D | - | 211 | 274 | IPR036638 | GO:0046983(InterPro) | |
Cre06g2093 | 422 | MobiDBLite | consensus disorder prediction | 304 | 330 | - | - | |
Cre06g2093 | 422 | MobiDBLite | consensus disorder prediction | 168 | 220 | - | - | |
Cre06g2093 | 422 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 215 | 277 | IPR036638 | GO:0046983(InterPro) | |
Cre06g2093 | 422 | MobiDBLite | consensus disorder prediction | 28 | 49 | - | - | |
Cre06g2093 | 422 | FunFam | Transcription factor bHLH66 | 214 | 279 | - | - | |
Cre06g2093 | 422 | Pfam | Helix-loop-helix DNA-binding domain | 222 | 267 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1905 | Cre-Chr3:36090427 | Cre06g2093 | Cre-Chr6:28704313 | 4.00E-34 | dispersed | |
Cre06g2093 | Cre-Chr6:28704313 | Cre09g0707 | Cre-Chr9:6830245 | 1.70E-46 | dispersed | |
Cre06g2093 | Cre-Chr6:28704313 | Cre02g2023 | Cre-Chr2:33718261 | 1.00E-80 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53906 | PF00010 | HLH | 1.60E-09 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2093 | - | - | - | 0.0 |