Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2098 ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATTTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCCTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAGGAAGTTGATGAATCGGTGTCGCCTAAGCACGTAGACGATGAATTAAAAGATAATCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 41.67 MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENLEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNPDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDNREVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28776103 28777122 + CrPI670011_06g020980.1 Cre06g2098 501560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2098 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 Gene3D - 162 286 IPR015300 -
Cre06g2098 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cre06g2098 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Cre06g2098 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Cre06g2098 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2098 K09287 - - csv:101212246 626.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1277 Cre-Chr3:19182165 Cre06g2098 Cre-Chr6:28776103 2.00E-44 dispersed
Cre03g1653 Cre-Chr3:32864793 Cre06g2098 Cre-Chr6:28776103 2.70E-82 dispersed
Cre06g2098 Cre-Chr6:28776103 Cre10g1985 Cre-Chr10:34551782 4.90E-25 dispersed
Cre06g2098 Cre-Chr6:28776103 Cre05g2474 Cre-Chr5:36120339 1.90E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1985 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 8.1e-48 187.2
Cre06g1000 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 6.0e-43 171.0
Cre09g2381 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.4e-39 159.8
Cre07g1170 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.8e-39 159.5
Cre05g2474 . 183 306 RAV Transcription Factor Family AT2G36080 60.8 5.8e-38 154.5
Cre09g2381 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.2e-56 216.5
Cre06g1000 . 74 325 RAV Transcription Factor Family AT2G46870 50.6 1.4e-53 207.2
Cre07g1170 . 67 313 RAV Transcription Factor Family AT2G46870 51.9 6.7e-53 204.9
Cre05g2474 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.2e-39 159.5
Cre10g1985 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.7e-38 155.6
Cre10g1985 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.5e-44 174.9
Cre06g1000 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 8.3e-40 161.0
Cre09g2381 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 7.0e-39 157.9
Cre07g1170 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 2.0e-38 156.4
Cre09g2381 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.5e-52 203.0
Cre07g1170 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 4.3e-49 192.2
Cre06g1000 . 82 202 RAV Transcription Factor Family AT3G61970 76.6 9.7e-49 191.0
Cre05g2474 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cre06g1000 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.6e-42 169.9
Cre09g2381 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 7.5e-42 168.3
Cre07g1170 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 6.5e-38 155.2
Cre10g1985 . 41 239 RAV Transcription Factor Family AT5G06250 53.7 1.7e-49 193.4
Cre06g1000 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.9e-40 163.3
Cre09g2381 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cre05g2474 . 180 291 RAV Transcription Factor Family AT5G06250 61.7 2.6e-37 152.9
Cre06g2098 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 2.1e-84 309.7
Cre03g1653 . 47 330 RAV Transcription Factor Family AT1G50680 54.0 7.7e-79 291.2
Cre06g2098 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 8.3e-84 307.8
Cre03g1653 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 2.0e-77 286.6
Cre05g2474 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 9.0e-107 384.0
Cre03g1277 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.3e-92 337.0
Cre09g2381 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.8e-38 154.8
Cre06g1000 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.5e-37 154.1
Cre10g1985 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.5e-37 154.1
Cre05g2474 . 6 345 RAV Transcription Factor Family AT3G25730 61.1 5.4e-101 364.8
Cre03g1277 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.1e-88 323.9
Cre10g1985 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.6e-36 150.6
Cre05g2474 . 1 348 RAV Transcription Factor Family AT1G68840 62.2 3.2e-112 402.1
Cre03g1277 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.4e-93 338.6
Cre10g1985 . 41 169 RAV Transcription Factor Family AT1G68840 64.6 6.3e-39 158.7
Cre09g2381 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.8e-38 157.1
Cre06g1000 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.2e-37 154.5
Cre05g2474 . 6 345 RAV Transcription Factor Family AT3G25730 61.1 5.4e-101 364.8
Cre03g1277 . 34 313 RAV Transcription Factor Family AT3G25730 61.8 1.1e-88 323.9
Cre10g1985 . 41 153 RAV Transcription Factor Family AT3G25730 64.6 1.6e-36 150.6
Cre06g2098 . 41 339 RAV Transcription Factor Family AT1G51120 52.7 8.3e-84 307.8
Cre03g1653 . 52 279 RAV Transcription Factor Family AT1G51120 61.0 2.0e-77 286.6
Cre10g1985 . 34 163 RAV Transcription Factor Family AT3G11580 65.9 5.5e-44 174.9
Cre06g1000 . 81 201 RAV Transcription Factor Family AT3G11580 59.1 8.3e-40 161.0
Cre09g2381 . 29 140 RAV Transcription Factor Family AT3G11580 61.8 7.0e-39 157.9
Cre07g1170 . 67 175 RAV Transcription Factor Family AT3G11580 63.9 2.0e-38 156.4
Cre06g1000 . 55 194 RAV Transcription Factor Family AT4G01500 61.0 2.6e-42 169.9
Cre09g2381 . 30 141 RAV Transcription Factor Family AT4G01500 69.7 7.5e-42 168.3
Cre07g1170 . 68 175 RAV Transcription Factor Family AT4G01500 66.4 6.5e-38 155.2
Cre10g1985 . 41 156 RAV Transcription Factor Family AT2G36080 76.7 8.1e-48 187.2
Cre06g1000 . 79 194 RAV Transcription Factor Family AT2G36080 68.9 6.0e-43 171.0
Cre09g2381 . 29 138 RAV Transcription Factor Family AT2G36080 69.0 1.4e-39 159.8
Cre07g1170 . 64 175 RAV Transcription Factor Family AT2G36080 69.2 1.8e-39 159.5
Cre05g2474 . 183 306 RAV Transcription Factor Family AT2G36080 60.8 5.8e-38 154.5
Cre10g1985 . 41 239 RAV Transcription Factor Family AT5G06250 53.7 1.7e-49 193.4
Cre06g1000 . 84 194 RAV Transcription Factor Family AT5G06250 64.5 1.9e-40 163.3
Cre09g2381 . 30 138 RAV Transcription Factor Family AT5G06250 64.7 2.1e-39 159.8
Cre05g2474 . 180 291 RAV Transcription Factor Family AT5G06250 61.7 2.6e-37 152.9
Cre09g2381 . 29 144 RAV Transcription Factor Family AT2G46870 87.2 2.2e-56 216.5
Cre06g1000 . 74 325 RAV Transcription Factor Family AT2G46870 50.6 1.4e-53 207.2
Cre07g1170 . 67 313 RAV Transcription Factor Family AT2G46870 51.9 6.7e-53 204.9
Cre05g2474 . 183 291 RAV Transcription Factor Family AT2G46870 69.6 3.2e-39 159.5
Cre10g1985 . 36 152 RAV Transcription Factor Family AT2G46870 65.8 4.7e-38 155.6
Cre06g2098 . 45 339 RAV Transcription Factor Family AT1G50680 52.5 2.1e-84 309.7
Cre03g1653 . 47 330 RAV Transcription Factor Family AT1G50680 54.0 7.7e-79 291.2
Cre09g2381 . 28 144 RAV Transcription Factor Family AT3G61970 80.8 2.5e-52 203.0
Cre07g1170 . 66 203 RAV Transcription Factor Family AT3G61970 68.8 4.3e-49 192.2
Cre06g1000 . 82 202 RAV Transcription Factor Family AT3G61970 76.6 9.7e-49 191.0
Cre05g2474 . 183 291 RAV Transcription Factor Family AT3G61970 70.0 1.8e-39 160.2
Cre05g2474 . 1 347 RAV Transcription Factor Family AT1G13260 62.3 9.0e-107 384.0
Cre03g1277 . 1 312 RAV Transcription Factor Family AT1G13260 58.1 1.3e-92 337.0
Cre09g2381 . 31 138 RAV Transcription Factor Family AT1G13260 71.6 8.8e-38 154.8
Cre06g1000 . 80 194 RAV Transcription Factor Family AT1G13260 66.4 1.5e-37 154.1
Cre10g1985 . 41 153 RAV Transcription Factor Family AT1G13260 69.0 1.5e-37 154.1
Cre05g2474 . 1 348 RAV Transcription Factor Family AT1G68840 62.2 3.2e-112 402.1
Cre03g1277 . 1 316 RAV Transcription Factor Family AT1G68840 55.2 4.4e-93 338.6
Cre10g1985 . 41 169 RAV Transcription Factor Family AT1G68840 64.6 6.3e-39 158.7
Cre09g2381 . 30 138 RAV Transcription Factor Family AT1G68840 70.3 1.8e-38 157.1
Cre06g1000 . 84 201 RAV Transcription Factor Family AT1G68840 63.3 1.2e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53907 PF02362 B3 1.00E-23 CL0405 Cre TF