Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2098 ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATTTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCCTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAGGAAGTTGATGAATCGGTGTCGCCTAAGCACGTAGACGATGAATTAAAAGATAATCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 41.67 MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENLEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNPDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDNREVKGFKLFGVHIK 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28776103 28777122 + CrPI670011_06g020980.1 Cre06g2098 501560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2098 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 SMART B3_2 167 282 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 CDD B3_DNA 166 278 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 Gene3D - 162 286 IPR015300 -
Cre06g2098 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677(InterPro)
Cre06g2098 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cre06g2098 339 FunFam AP2 domain-containing protein RAP2.8 44 101 - -
Cre06g2098 339 CDD AP2 44 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 SMART rav1_2 45 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2098 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 44 337 IPR044800 GO:0003700(InterPro)
Cre06g2098 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1277 Cre-Chr3:19182165 Cre06g2098 Cre-Chr6:28776103 2.00E-44 dispersed
Cre03g1653 Cre-Chr3:32864793 Cre06g2098 Cre-Chr6:28776103 2.70E-82 dispersed
Cre06g2098 Cre-Chr6:28776103 Cre10g1985 Cre-Chr10:34551782 4.90E-25 dispersed
Cre06g2098 Cre-Chr6:28776103 Cre05g2474 Cre-Chr5:36120339 1.90E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53907 PF02362 B3 1.00E-23 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2098 K09287 - csv:101212246 626.706