Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2098 | ATGAAACAGGAGTTGTCAAGTACGATTTCAAAAACCAGGGTGAATGCAATTGGAGAAGCTTTAGATTCAAGCTGTATCACTTGTCCATCTCCTGCTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGTGTCGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCGGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGAAGTGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACCGTACCAAATTTGCCGAGTATTTGAGGGATTGTTCTGAAAGTGCACAAACATCAGCCAGTCCCTCGTCAGAAAAGGTGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCAAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCCGTTAAATACTTCCCTCACATATCAGCTAGTGCAATGGAAAATTTGGAACATGCAGATGATGATCGTGACGTGCAGCTAGTATTTTTTGACAAAATGCTGAGACAATGGAAATTTCGATACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGAGGTTGGAATCGTTTTGTGAAGGAAAAACAACTGAAAGCTAATGACACCATAGCTTTCTACTTGTGTGAAGCAGCAAAGGCAAGCGATTCTAGAACTACATTCTGTGTGGTGGATGTTAAAAACCCTGACAACGGTGGTAGCTTGGTTGAGAATGAAACCACATGCAGTGAATTGCAGCTCGATTTGAGGCTGGAGGAAGTTGATGAATCGGTGTCGCCTAAGCACGTAGACGATGAATTAAAAGATAATCGCGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA | 1020 | 41.67 | MKQELSSTISKTRVNAIGEALDSSCITCPSPANGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRDCSESAQTSASPSSEKVHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAMENLEHADDDRDVQLVFFDKMLRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKASDSRTTFCVVDVKNPDNGGSLVENETTCSELQLDLRLEEVDESVSPKHVDDELKDNREVKGFKLFGVHIK | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28776103 | 28777122 | + | CrPI670011_06g020980.1 | Cre06g2098 | 501560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2098 | 339 | Gene3D | AP2/ERF domain | 44 | 101 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2098 | 339 | SMART | B3_2 | 167 | 282 | IPR003340 | GO:0003677(InterPro) | |
Cre06g2098 | 339 | ProSiteProfiles | AP2/ERF domain profile. | 45 | 100 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2098 | 339 | CDD | B3_DNA | 166 | 278 | IPR003340 | GO:0003677(InterPro) | |
Cre06g2098 | 339 | Gene3D | - | 162 | 286 | IPR015300 | - | |
Cre06g2098 | 339 | Pfam | B3 DNA binding domain | 167 | 266 | IPR003340 | GO:0003677(InterPro) | |
Cre06g2098 | 339 | ProSiteProfiles | B3 DNA-binding domain profile. | 167 | 282 | IPR003340 | GO:0003677(InterPro) | |
Cre06g2098 | 339 | SUPERFAMILY | DNA-binding pseudobarrel domain | 166 | 266 | IPR015300 | - | |
Cre06g2098 | 339 | FunFam | AP2 domain-containing protein RAP2.8 | 44 | 101 | - | - | |
Cre06g2098 | 339 | CDD | AP2 | 44 | 102 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2098 | 339 | SMART | rav1_2 | 45 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2098 | 339 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 44 | 337 | IPR044800 | GO:0003700(InterPro) | |
Cre06g2098 | 339 | SUPERFAMILY | DNA-binding domain | 44 | 101 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre03g1277 | Cre-Chr3:19182165 | Cre06g2098 | Cre-Chr6:28776103 | 2.00E-44 | dispersed | |
Cre03g1653 | Cre-Chr3:32864793 | Cre06g2098 | Cre-Chr6:28776103 | 2.70E-82 | dispersed | |
Cre06g2098 | Cre-Chr6:28776103 | Cre10g1985 | Cre-Chr10:34551782 | 4.90E-25 | dispersed | |
Cre06g2098 | Cre-Chr6:28776103 | Cre05g2474 | Cre-Chr5:36120339 | 1.90E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53907 | PF02362 | B3 | 1.00E-23 | CL0405 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2098 | K09287 | - | csv:101212246 | 626.706 |