Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2099 | ATGGCGGAAAAGGACAGAGACGGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCGGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCTAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAACGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTTTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGAGTGCGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA | 1293 | 49.03 | MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28784355 | 28785647 | - | CrPI670011_06g020990.1 | Cre06g2099 | 501561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2099 | 430 | CDD | CIPK_C | 301 | 416 | - | - | |
Cre06g2099 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 287 | IPR011009 | - | |
Cre06g2099 | 430 | Pfam | NAF domain | 298 | 357 | IPR004041 | GO:0007165(InterPro) | |
Cre06g2099 | 430 | ProSiteProfiles | Protein kinase domain profile. | 17 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre06g2099 | 430 | FunFam | Non-specific serine/threonine protein kinase | 7 | 299 | - | - | |
Cre06g2099 | 430 | SMART | serkin_6 | 17 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre06g2099 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 135 | 147 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cre06g2099 | 430 | ProSitePatterns | Protein kinases ATP-binding region signature. | 23 | 50 | IPR017441 | GO:0005524(InterPro) | |
Cre06g2099 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 14 | 98 | - | - | |
Cre06g2099 | 430 | CDD | STKc_SnRK3 | 16 | 270 | - | - | |
Cre06g2099 | 430 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 7 | 415 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cre06g2099 | 430 | FunFam | Non-specific serine/threonine protein kinase | 9 | 96 | - | - | |
Cre06g2099 | 430 | ProSiteProfiles | NAF domain profile. | 295 | 319 | IPR018451 | GO:0007165(InterPro) | |
Cre06g2099 | 430 | Gene3D | Kinase associated domain 1, KA1 | 295 | 421 | - | - | |
Cre06g2099 | 430 | FunFam | Non-specific serine/threonine protein kinase | 295 | 420 | - | - | |
Cre06g2099 | 430 | Coils | Coil | 280 | 300 | - | - | |
Cre06g2099 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 99 | 277 | - | - | |
Cre06g2099 | 430 | Pfam | Protein kinase domain | 17 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2022 | Cre-Chr2:33685979 | Cre06g2099 | Cre-Chr6:28784355 | 6.80E-213 | dispersed | |
Cre04g0748 | Cre-Chr4:25902013 | Cre06g2099 | Cre-Chr6:28784355 | 1.40E-147 | dispersed | |
Cre04g1993 | Cre-Chr4:37299559 | Cre06g2099 | Cre-Chr6:28784355 | 4.30E-144 | dispersed | |
Cre05g0579 | Cre-Chr5:5119762 | Cre06g2099 | Cre-Chr6:28784355 | 2.60E-93 | dispersed | |
Cre06g1179 | Cre-Chr6:5631596 | Cre06g2099 | Cre-Chr6:28784355 | 2.00E-103 | dispersed | |
Cre06g1409 | Cre-Chr6:8345290 | Cre06g2099 | Cre-Chr6:28784355 | 2.70E-100 | dispersed | |
Cre06g1984 | Cre-Chr6:27287585 | Cre06g2099 | Cre-Chr6:28784355 | 5.20E-111 | dispersed | |
Cre06g2099 | Cre-Chr6:28784355 | Cre10g1444 | Cre-Chr10:28245196 | 3.70E-134 | dispersed | |
Cre05g1802 | Cre-Chr5:30026753 | Cre06g2099 | Cre-Chr6:28784355 | 7.90E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64225 | PF00069 | Pkinase | 1.50E-73 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2099 | - | - | - | 0.0 |