Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2099 ATGGCGGAAAAGGACAGAGACGGTAATTCTGGTGTGCTCCATGGGAAGTATGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGCATGGCGATGAAGGTGGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAGCATCCGAACATTGTTGAGCTTCATGAGGTTATGGCGAGCAAATCGAAGATCTATTTCGCTATGGAGCTTGTTCGAGGCGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTGGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGTCGAGGAGTTTATCATCGGGACCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAATCTTAAGGTAACTGATTTTGGACTCAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTGTTACACACAACTTGTGGAACGCCGGCGTATGTTGCGCCGGAAGTTATCGGGAAGAAGGGATACAACGGCGCCAAAGCCGATCTGTGGTCATGTGGAGTCATCCTTTACGTTCTCCTCGCCGGATTTCTTCCATTCCAGGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGACTTCAAGTGCCCGCCGTGGTTCTCATCGGAAGCCCGTCGACTAATCACCAAACTCCTGGATCCAAATCCGAGCACCAGAATTACAACTTCTAAGATCATGGAATCGTCCTGGTTCAAGAAATCTGTACCAAGGACTGTGGTGACGAAAGAGGAGCAAGAATTCAACGAGAGCAACGAGAAATTGAAGCAATCTGAAACATTGAACGCATTCCATATAATTTCTTTATCAGAAGGTTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAAGAGAAAGAGGAGCTGAGATTTGCGACGACGAGGCCAGCGAGCAGTGTGATATCGAAGCTGGAAGAGGTGGCGAAGGCAGGGAAATTCAGCGTCAAAAAGAGCGAATCGAGGGTCAGATTGCAGGGACAGGAGTGCGGAAGAAAAGGGAAACTGGCGGTGGCGGCGGAGATCTTCGCGGTGACGCCATCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGATACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTCCGGCCGGCGCTGAAAGACATCGTGTGGACATCACCGACGGAGAACTCCATGCCGGCTTGA 1293 49.03 MAEKDRDGNSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSSEARRLITKLLDPNPSTRITTSKIMESSWFKKSVPRTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLAVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28784355 28785647 - CrPI670011_06g020990.1 Cre06g2099 501561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2099 430 CDD CIPK_C 301 416 - -
Cre06g2099 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Cre06g2099 430 Pfam NAF domain 298 357 IPR004041 GO:0007165(InterPro)
Cre06g2099 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2099 430 FunFam Non-specific serine/threonine protein kinase 7 299 - -
Cre06g2099 430 SMART serkin_6 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2099 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2099 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524(InterPro)
Cre06g2099 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Cre06g2099 430 CDD STKc_SnRK3 16 270 - -
Cre06g2099 430 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 415 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cre06g2099 430 FunFam Non-specific serine/threonine protein kinase 9 96 - -
Cre06g2099 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165(InterPro)
Cre06g2099 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Cre06g2099 430 FunFam Non-specific serine/threonine protein kinase 295 420 - -
Cre06g2099 430 Coils Coil 280 300 - -
Cre06g2099 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Cre06g2099 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2022 Cre-Chr2:33685979 Cre06g2099 Cre-Chr6:28784355 6.80E-213 dispersed
Cre04g0748 Cre-Chr4:25902013 Cre06g2099 Cre-Chr6:28784355 1.40E-147 dispersed
Cre04g1993 Cre-Chr4:37299559 Cre06g2099 Cre-Chr6:28784355 4.30E-144 dispersed
Cre05g0579 Cre-Chr5:5119762 Cre06g2099 Cre-Chr6:28784355 2.60E-93 dispersed
Cre06g1179 Cre-Chr6:5631596 Cre06g2099 Cre-Chr6:28784355 2.00E-103 dispersed
Cre06g1409 Cre-Chr6:8345290 Cre06g2099 Cre-Chr6:28784355 2.70E-100 dispersed
Cre06g1984 Cre-Chr6:27287585 Cre06g2099 Cre-Chr6:28784355 5.20E-111 dispersed
Cre06g2099 Cre-Chr6:28784355 Cre10g1444 Cre-Chr10:28245196 3.70E-134 dispersed
Cre05g1802 Cre-Chr5:30026753 Cre06g2099 Cre-Chr6:28784355 7.90E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64225 PF00069 Pkinase 1.50E-73 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2099 - - - 0.0