Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2103 ATGGCGTTGTTGCGCAAATTGTTCTTCCGGAAGCCGCCCGATGGCCTTCTTGAGATCTGTGAAAGAGTCTATGTTTTTGATTGCTGTTTTACCACGGATACTTGGAAGGAAGAGAATTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCGTTCTTGGTATTCAATTTTAGGAGATTAGAGTTGCAAAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGTTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTCTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCGGCTCTCTTGATTTATAGGAAACAATATAGTGGGGAACAAAGGACATTGGACATGGTTTATCGACAGGCACCTCGTGAGCTTTTGCAGTTCTTGTCTCCTATGAATCCAGTCCCTTCTCAATTAAGGTATCTGCAATATGTTGCAAGGAGGAATGTAGCCTTAGAATGGCCACCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGATTTATTCCAAATTTTGATGGAGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTACTTGTCAGTGATCGAACTCCTAAAGTTCTGTATTCAACTCCTAAAAGAAGCAAAAATATCCGTACTTACAAACAGGCAGAATCAGAACTGGTTAAGATTGATGTTAATTGCCATATTCAAGGTGATGTTGTGCTTGAGTGCATCACCTTGGATGATGACATGGACTTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATCGACACTTTGTGGAACGCTAAAGATAAATTTCCAAAGGACTTTCGAGCAGAGATTCTCTTCTCTGAGATGGATGCTGGAACTTGTACTGTCGCAAATGATATACTTTGCATTGAGGAGGAAGGTCTCCCCATCGAAGCATTTGCTAAAGTGCAAGAAATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTTCATCAGATGAATGCCTTAAACATAGCCCAAGAAAAGTCAGACAATAATTCTCTTTGGAGTACACAAGTTAGTCCTTTACTTCAGTGTGCAAGTCCTAGAAAACTTCCACAGAAATTCACATTGGAGAACAAAATTAAAAGCGTAGAGAAGGAAGAATCTACTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACTGAACAGAACTATGAATCTGATTCAGTATTCCAGCAGGTGCCTCAATCTTCAGAGTCTTTTCCACTTACCTATGACATTTTACAAGATTCGCCAAATTCAGAGAGAAGCGATAGGACCTCATATAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGATGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTCCCGAATGCAGCAATGGCTTCTTCTCTTGCACCTGAATCTCTTCAGAATAAAAGTTTCTACACAGAAACAACCATACCATCACCTCCTCCTCTCCCCCAACTTTCCACAGATATTTCTGCTGCAAATTCTCAAGCTCCTTCTCCCCCTACTCCAACTGCATCACCACTTTCGTCTAGTAACTTTTCAACTCTAAGACCAGATAGATCTTCCCTCACCGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAACCATTGACCCTCCCCTGTCCGTAACCTCTGCAGTTAGTTCCTCAACACAGCCTCCTCCACCACCTCCTCCTCCACCACCTCCTTCGACACCTCCTTTGAACAATACCAAAGCAGTTCGAGTTAAAGCTTCTCCGCCAACACCCCCTCCTTTTCCTTCAACATTTGCTTCCCATCCTACAATTGCATCCTTAGTGCCTCAACCACCACCACCTCCTCCTCCTCCTCCCACATCCACTGTAAATCGTAAAATTTCATCTCCAATCCCTTCACCTCCACCACCTCCTCCTCCTCCTCCAATGGCCCTTGTAGATCCTAAAATTTCCTCTCCAGTCCCTCCACCACCACCACCTCTTCCTATGACGTCCAAACAGGTTGAAAGTACTTCAACATCTCCATTTGTTCCTCCACCACCACCACCTCTTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCTCCTGTTCCTCCACCGCCACCACCTCTTCCGTCTAGACAGGGAAGTACTTCAACATCTCCATCTGTCCCCCCTCCTCCACCGCCACCTGCTTCCACCACAAGCTCCTCTTCACCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGGGAGGGACTTCAAAATTGGGTGAACTGTGTCCTGGTTCTCTTCTTGGAAATGGTTCGTCTAGGTCTTCCTCTCCTGTGCCACCAAGTAGTTCTCCATCAGCTATAAAGGGACGGAGTTTGTCGCGCACTATAAGTTCAAGAACACATATAACCAAGAAACTGAAGCCATTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCTCAAAAAACTGGTGAAGCTGCCAGGGCACCAGAGATTGACATGTCAGAGCTTGAAAGTCTTTTCTCAGCGGCAGTTCCTGCTCCTGATCAGCACAAGAAGTCGGGTGGACGTGGTTCAGTTGGCAATAAACCTGAGAAAGTACAACTGATTGATCACAGGCGAGCTTATAATTGTGAAATCATGCTTTCAAAGGTCAAGGTGCCTTTGCAGGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTTTGGATATCGATCAGGTTGAGAATCTTATTAAGTTTTGTCCGACCAAGGAGGAAATGGATTTACTTAAGGGGTACACCGGAGAAAAGGAGAAGCTTGGAAAATGTGAACAGTTCTTCTTGGAGTTGATGCAAGTACCTCGTGTTGAATCTAAACTTCGAGTCTTCTCATTCAAGATACAGTTCACCTCTCAGGTCGTAGACCTCAAGAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTAGGAAATGCTTTAAACCAAGGAACAGCAAGGGGCTCTGCGATAGGATTTAGGCTGGACAGCCTTCTCAAACTGACAGAAACTCGTGCACGAAACAACAAGATGACTCTAATGCATTATCTTTGCAAGATACTTGCTGACAAGCTGCCAGAGGTTCTGGATTTTTCTAAAGATCTTGCAAGCTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAAATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCTATATCCAATAATTTCCGAATGGTTTTAAAGGAGTTCCTCCGTTTTGCTGAAGCTGAAGTGAGAACTTTGGCTTCACTGTACTCTAGCGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGAGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACTTTATGCAACTTTGTGAGAATGTTTAACCGAGCTCACGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACAGAAAGCGAAAAATCAAAGACTGGGCACTTGCACAAGAGGACGAGGACGAGACAGTTATCACACTCCCAGATCGAGATTAGCAATGTCAACAACACTGGCAGGTTGCGCTTTATCCTATTGTTGAATGTGCTGAACAGGCTACTTGTATCGAAACTGAACTAA 3906 43.09 MALLRKLFFRKPPDGLLEICERVYVFDCCFTTDTWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLELQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLQFLSPMNPVPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNIRTYKQAESELVKIDVNCHIQGDVVLECITLDDDMDFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTCTVANDILCIEEEGLPIEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKSDNNSLWSTQVSPLLQCASPRKLPQKFTLENKIKSVEKEESTPTSKFSPDAAKTEQNYESDSVFQQVPQSSESFPLTYDILQDSPNSERSDRTSYSASVGSHSFIDSDGEIDVSHLKTASSSFPNAAMASSLAPESLQNKSFYTETTIPSPPPLPQLSTDISAANSQAPSPPTPTASPLSSSNFSTLRPDRSSLTEEIEIYSKDQNQLSTIDPPLSVTSAVSSSTQPPPPPPPPPPPSTPPLNNTKAVRVKASPPTPPPFPSTFASHPTIASLVPQPPPPPPPPPTSTVNRKISSPIPSPPPPPPPPPMALVDPKISSPVPPPPPPLPMTSKQVESTSTSPFVPPPPPPLPMTSRQVGSTSTSSPVPPPPPPLPSRQGSTSTSPSVPPPPPPPASTTSSSSPVPSAPPPPTLSGGGTSKLGELCPGSLLGNGSSRSSSPVPPSSSPSAIKGRSLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQHKKSGGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLQDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRVESKLRVFSFKIQFTSQVVDLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLASLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSSVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATESEKSKTGHLHKRTRTRQLSHSQIEISNVNNTGRLRFILLLNVLNRLLVSKLN 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28833198 28843944 - CrPI670011_06g021030.1 Cre06g2103 501565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2103 1301 SMART PTEN_C2_2 197 337 IPR014020 -
Cre06g2103 1301 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Cre06g2103 1301 ProSiteProfiles Formin homology-2 (FH2) domain profile. 856 1255 IPR015425 -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 541 859 - -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 575 589 - -
Cre06g2103 1301 Gene3D Formin, FH2 domain 855 1240 IPR042201 -
Cre06g2103 1301 SUPERFAMILY Formin homology 2 domain (FH2 domain) 765 1246 - -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 443 464 - -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 827 859 - -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 597 621 - -
Cre06g2103 1301 Gene3D - 200 340 - -
Cre06g2103 1301 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 186 IPR029021 -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 432 464 - -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 478 500 - -
Cre06g2103 1301 Coils Coil 1230 1250 - -
Cre06g2103 1301 Gene3D Protein tyrosine phosphatase superfamily 15 199 IPR029021 -
Cre06g2103 1301 PANTHER FORMIN-J 1 1254 IPR051144 -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 622 640 - -
Cre06g2103 1301 SMART it6_source 627 1301 IPR015425 -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 670 728 - -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 1248 1267 - -
Cre06g2103 1301 Pfam Formin Homology 2 Domain 863 1230 IPR015425 -
Cre06g2103 1301 MobiDBLite consensus disorder prediction 761 809 - -
Cre06g2103 1301 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Cre06g2103 1301 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Cre06g2103 1301 PRINTS Proline rich extensin signature 649 666 - -
Cre06g2103 1301 PRINTS Proline rich extensin signature 607 628 - -
Cre06g2103 1301 PRINTS Proline rich extensin signature 562 578 - -
Cre06g2103 1301 PRINTS Proline rich extensin signature 628 644 - -
Cre06g2103 1301 PRINTS Proline rich extensin signature 671 696 - -
Cre06g2103 1301 PRINTS Proline rich extensin signature 541 553 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2103 Cre-Chr6:28833198 Cre07g0594 Cre-Chr7:3745089 1.80E-253 dispersed
Cre05g1800 Cre-Chr5:29989797 Cre06g2103 Cre-Chr6:28833198 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2103 K28090 - csv:101221713 1968.36