Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2110 ATGGCGGAGCGGGAAAGCTTCGAAACTGACCAACTCGGAAGCTCCAAGGCGGCTACTGCCGGGCAAGAGGATGATGAAGAAGACATGGAAGATTCCGAGGATGAATCAGAGGTGGAATTGGAAGATGGAGGAGGAGGAGGAGGGAGTGAGTTGCAACCGACTGAGTTGAGAACCGGTTCGTGGGTTAGTGAAGCTGTGGTGAGGGGTTCACGTTCTGAAACCCTAACGGTGCCGTCTGCGAATCAATCCTCCGAGAACGGTCGGTCTGATGGTTTGCCTGTCAATTCTGCTGTGCAGTCACTCGAAGGAGCTGAATTGAAGCAAGCTCCATCTTCCCGCAATGAGCCAAAGGCTGTTGAAGCAACCCAGACAGATAAGGTTCAAGAACAAAGCCAGCTTCAGGTGTCAACATTTAAGGGACCTGGTTCGGACCAATCACCAACTTCAGTTACCCAGTCTATCTCATCCTCCCAAAGTCCAAGTTTGTCTGAACATAAGCTGTCACCTAAGAAGGTCCAGAAAGAATGTAAGCCAGAGCCAAGCCAGAAAAATTCCTCCAACCATAAAACTGCATCATCTGTTCCCAATGTAAGGACACCTGCTTCTGATGGTTACAATTGGAGAAAATACGGTCAGAAGCAAGTGAAGAGTCCTAAGGGTTCACGTAGCTATTACAAGTGTACATATTCTGAATGCTTTGCTAAGAAGATCGAATGTTGTGATCACTCAGGCCATAGAACAGGGACTGTTTACAAGAGCGAACATAGCCACGATCCACCTAGGAAGATTAGTATCCCCAAGGAAAGTAAGCTCGTGCCATATGTTGAGCCTGTGGTTAAAAAAATCATTGCAGAACATTCCAGAAGAGTAATTAATGATTCAGATCCTCCCACGCCTTCAAAAGAACCTGTACGGGAAACAGCTATAGTCCTTGAAAGGAAACGACAGCACTCAAGTGACTCTGATGGAAATGATGAATTTAAAATCAAAGATGAGAATGGCGATGGACCTGAAACAAAACAAAAAGTTAAGAAAAGCAGTGCGGGAAATTCAGGTACTCCCTTAAAACCCGGAAAGAAACCCAAATTTGTGGTGCATGCAGCAGGTGATGTGGGAATCTCGGGTGACGGATACAGATGGCGCAAGTATGGTCAGAAAATGGTGAAAGGAAATCCTCATCCTAGGAACTACTACCGATGTACTTCTGCTGGGTGTCCGGTCCGTAAACATATCGAATCAGCAGTAGAAAATCCAAATGCAGTAATTATAACATACAAGGGAGTTCATGATCACGACATGCCTGTACCAAAGAAACGACACGGTCCACCGAGTGCTCCTCTTGTAGCTGCTGCAGCGCCAGCCTCCATGAGCAATACGCAACCGAAGAAAACCGACGTGGTTGAGAGCCAAATCTCTTCAACACAGTGGTCTGTGGATGCTGAAGGAGAGTTGACTGGTGAGGCCTTGGAGCTTGGGGGTGAGAAGGCAATGGAATCTGCTCGAACACTTCTGAGCATTGGATTTGAAATCAAGCCTTGCTGA 1542 46.89 MAERESFETDQLGSSKAATAGQEDDEEDMEDSEDESEVELEDGGGGGGSELQPTELRTGSWVSEAVVRGSRSETLTVPSANQSSENGRSDGLPVNSAVQSLEGAELKQAPSSRNEPKAVEATQTDKVQEQSQLQVSTFKGPGSDQSPTSVTQSISSSQSPSLSEHKLSPKKVQKECKPEPSQKNSSNHKTASSVPNVRTPASDGYNWRKYGQKQVKSPKGSRSYYKCTYSECFAKKIECCDHSGHRTGTVYKSEHSHDPPRKISIPKESKLVPYVEPVVKKIIAEHSRRVINDSDPPTPSKEPVRETAIVLERKRQHSSDSDGNDEFKIKDENGDGPETKQKVKKSSAGNSGTPLKPGKKPKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIESAVENPNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMSNTQPKKTDVVESQISSTQWSVDAEGELTGEALELGGEKAMESARTLLSIGFEIKPC 513
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 28904915 28908121 + CrPI670011_06g021100.1 Cre06g2110 501572
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2110 513 SUPERFAMILY WRKY DNA-binding domain 370 434 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 ProSiteProfiles WRKY domain profile. 202 260 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 FunFam WRKY transcription factor 361 435 - -
Cre06g2110 513 MobiDBLite consensus disorder prediction 167 182 - -
Cre06g2110 513 MobiDBLite consensus disorder prediction 310 342 - -
Cre06g2110 513 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 454 IPR044810 GO:0003700(InterPro)
Cre06g2110 513 MobiDBLite consensus disorder prediction 183 200 - -
Cre06g2110 513 SMART WRKY_cls 374 433 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 SMART WRKY_cls 201 259 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 Gene3D WRKY domain 359 435 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 Gene3D WRKY domain 185 261 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 MobiDBLite consensus disorder prediction 115 166 - -
Cre06g2110 513 MobiDBLite consensus disorder prediction 310 361 - -
Cre06g2110 513 MobiDBLite consensus disorder prediction 23 41 - -
Cre06g2110 513 MobiDBLite consensus disorder prediction 53 107 - -
Cre06g2110 513 MobiDBLite consensus disorder prediction 1 222 - -
Cre06g2110 513 ProSiteProfiles WRKY domain profile. 369 434 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 Pfam WRKY DNA -binding domain 203 258 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre06g2110 513 SUPERFAMILY WRKY DNA-binding domain 199 260 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2110 Cre-Chr6:28904915 Cre11g0945 Cre-Chr11:6767412 9.10E-39 dispersed
Cre06g2110 Cre-Chr6:28904915 Cre05g2563 Cre-Chr5:36872689 1.10E-41 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53908 PF03106 WRKY 6.60E-24 CL0274 Cre TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2110 - - - 0.0