Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2121 ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTTCTCCTGGAGAGGAGAGGTCTAGGGAAACAAATCGAGACAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGATCTGAACCAGAAACTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATTTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGACTGGTGAAACTTCGTACTCTTGGGAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCGCGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCCAGGCGTGAGGAGGTTAAAGCCAAAACTATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATCAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGCGCAGACGTATCTGGTATTCAGCCTGCTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACTTTGAATGCAAGGCTTCTGCCCCAGGGTACAGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAGGTGCAAGTGCAGGTGGTTCTACCACTCGTCCCGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTTCTTTCACCTGCCGAGAGACCACAGGTTCCAACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTATCTCTCTTCTTGAGGAATATTTCAGTATCCGGCTATTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATAGAAACTGGATGTTTGCTATATGCTTCGGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAATTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCAATATCGAGGACTGTCGAAGTCTGGCATATTAA 2427 46.48 MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSSPGEERSRETNRDRDFGSHFDSRQQDANHLNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATVNIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPVPRGADVSGIQPAGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGAGAGASAGGSTTRPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTISLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIETGCLLYASVLDDAGIDLPKAPVNFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASNIEDCRSLAY 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 28972978 28979343 - CrPI670011_06g021210.1 Cre06g2121 501583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2121 808 Gene3D - 636 802 - -
Cre06g2121 808 MobiDBLite consensus disorder prediction 174 194 - -
Cre06g2121 808 MobiDBLite consensus disorder prediction 113 130 - -
Cre06g2121 808 Gene3D - 210 445 - -
Cre06g2121 808 MobiDBLite consensus disorder prediction 1 43 - -
Cre06g2121 808 ProSiteProfiles MI domain profile. 642 764 IPR003891 -
Cre06g2121 808 FunFam Eukaryotic translation initiation factor isoform 4G-2 210 445 - -
Cre06g2121 808 MobiDBLite consensus disorder prediction 25 43 - -
Cre06g2121 808 MobiDBLite consensus disorder prediction 112 204 - -
Cre06g2121 808 SUPERFAMILY ARM repeat 212 446 IPR016024 -
Cre06g2121 808 SUPERFAMILY ARM repeat 638 797 IPR016024 -
Cre06g2121 808 SMART if4_15 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre06g2121 808 Pfam MIF4G domain 219 444 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Cre06g2121 808 SMART ma3_7 643 755 IPR003891 -
Cre06g2121 808 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 57 806 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
Cre06g2121 808 Pfam MA3 domain 643 755 IPR003891 -
Cre06g2121 808 MobiDBLite consensus disorder prediction 150 173 - -
Cre06g2121 808 MobiDBLite consensus disorder prediction 481 502 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0385 Cre-Chr5:3508626 Cre06g2121 Cre-Chr6:28972978 1.30E-53 dispersed
Cre06g1613 Cre-Chr6:11772458 Cre06g2121 Cre-Chr6:28972978 9.40E-57 dispersed
Cre03g0636 Cre-Chr3:5282426 Cre06g2121 Cre-Chr6:28972978 4.70E-09 transposed
Cre05g1786 Cre-Chr5:29806691 Cre06g2121 Cre-Chr6:28972978 1.90E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2121 K03260 - csv:101207520 1394.79