Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2121 | ATGCAGCAAGGTGATCAGACGGTTCTAAGCTTGAGACCTGGTGGCGGTCGACCTAGACTCCTTGGTCCTCGCTTCGACCTTTCATCTTCATCTTCTTCATCCTCTTCATCCTCTTTTGCCTTCGGTTCATTCTCCTCTGATCTCCCTACCCTCCGTCCCCATGCCGCTTCTTCCGCTTCCTTTTCTGTAAAGGCTGGAGATTCACGGTTTGAGGGTCGTGAGCGTGTTCGATATACCCGAGATCAGCTTTTGCAGCTTCGGGAGGCTGTGGAAGTTCCAGATGAGATTCTAAAAATTAAACGGGATATTGAAGTGGAAATTTTTGGCGAGGAACAAAGTTGGAGTCGTGGAGAGAGCAATCAACTCAATCAGTCTCAGAATCGCTATTCTGAGCCTGACAATCGTGACTGGCGTGGCCGCTCTGCCCAATTCTCTTCTCCTGGAGAGGAGAGGTCTAGGGAAACAAATCGAGACAGAGATTTTGGTAGTCATTTTGACTCTAGACAGCAAGATGCAAATCACTTGAATCGTCAAGATTCTAACTCATCTTGGACCCGAACCACTTCTAACCAAGGGGGAGGACCTCCTGCATTAATCAAAGCTGAGGTACCATGGTCGGCTAGGAGAGGAAATCTCTCTGATAAGGATCGTGTCTTGAAGACTGTAAAGGGGATATTGAACAAGTTAACACCAGAAAAGTTTGATCTCCTTAAGGGTCAGCTAATTGACTCTGGAATCACCTCCGCTGATATTTTGAAGGATGTCATTTCACTGATTTTTGACAAGGCTGTTCTTGAGCCCACATTTTGCCCCATGTATGCTCAATTATGTTCCGATCTGAACCAGAAACTACCTCAATTTCCCTCTGATGAACCTGGTGGTAGGGAAATTACTTTCAAACGAGTCCTCTTAAACATTTGTCAGGAGGCTTTTGAAGGTGCAGACAAGTTGAGGGAAGAGGTTAGGCAGATGACTGCCCCTGAACAAGAGAGCGAGCGCAGAGATAAAGACAGACTGGTGAAACTTCGTACTCTTGGGAATATTCGATTAATTGGAGAGCTTCTGAAGCAAAAGATGGTGCCTGAGAAGATTGTCCACCACATTGTCCAGGAACTCCTAGGACCAGATAACAAAACCTGTCCAGCTGAAGAAAACGTCGAGGCCATCTGTCAATTCTTTAACACCATAGGTAAGCAGCTAGATGAGAACACTAAATCGCGTCGTATTAATGACATGTACTTTGGCCGATTGAAAGAACTGACCACACACACTCAGTTGGCCCCACGATTGAAGTTCATGGTCCGTGATGTTCTTGATTTGCGTGCTAACAATTGGATTCCCAGGCGTGAGGAGGTTAAAGCCAAAACTATAAATGAAATACATTCAGAGGCAGAAAAAAATCTGGGACTACGTCCTGGTGCTACTGTTAATATCAGAAATAGTCGCGTTGTGTCTGGTTCTCCTGGGAACACTAGCCCTGGGGGCTTTCCGATCAATCGACCTGGTTTTGGGGGCATGATGCCTGGCATGCCAGGAACCAGGAAGATGCCTGGTATGCCAGGAATGGATAATGACAATTGGGAGGTACCTAGGGCCCGACCTGTACCAAGGGGCGCAGACGTATCTGGTATTCAGCCTGCTGGACGTGGCCAGGCACCGTTGGTTGGCAAAACATCAACTTTGAATGCAAGGCTTCTGCCCCAGGGTACAGGTGGGCTCATTAGCAATAAGACTAGTGCTCTATTGCAGGGTCAGGGTGCAGGTGCAGGTGCAGGTGCAAGTGCAGGTGGTTCTACCACTCGTCCCGTTAACTTTGGTCATGGGTTAGAGCCCTCTGGTCAGGTTCATAAACCTATTACGGCAGCAACAGTTCTTTCACCTGCCGAGAGACCACAGGTTCCAACTGCATCTTTGAAACAAGATGATCTCAGAAAGAAAACTATCTCTCTTCTTGAGGAATATTTCAGTATCCGGCTATTGGATGAAGCTTTACAGTGCGTGGAAGAACTCATGTCACCAGCTTACCACCCTGAGGTTGTAAAAGAAGCCATTTCCTTGGCTCTAGAGAAAAGCCCACCATGTGTTGAAGCAGTTGTAAAGTTTCTGGACTATTTACTCTCCAGGAAGGTTTTTACAGCTAGTGACATAGAAACTGGATGTTTGCTATATGCTTCGGTGCTCGACGATGCAGGCATCGATTTGCCAAAAGCACCTGTCAATTTTGGTGAGATAATCGGGAAACTTGTAACATCCGGTGGTTTGGATTTTCAGGTGGTGAAAGAGGCCATTAAGAAGGTGGAAGATGACAGGTTCAGGAAAGATATATTTGATGCTGTCTTGAAGACTATTAGTTCTAATGTGTCTGGGCAAGGATTATTGGACTCGTTGGCATCCAATATCGAGGACTGTCGAAGTCTGGCATATTAA | 2427 | 46.48 | MQQGDQTVLSLRPGGGRPRLLGPRFDLSSSSSSSSSSSFAFGSFSSDLPTLRPHAASSASFSVKAGDSRFEGRERVRYTRDQLLQLREAVEVPDEILKIKRDIEVEIFGEEQSWSRGESNQLNQSQNRYSEPDNRDWRGRSAQFSSPGEERSRETNRDRDFGSHFDSRQQDANHLNRQDSNSSWTRTTSNQGGGPPALIKAEVPWSARRGNLSDKDRVLKTVKGILNKLTPEKFDLLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNQKLPQFPSDEPGGREITFKRVLLNICQEAFEGADKLREEVRQMTAPEQESERRDKDRLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGPDNKTCPAEENVEAICQFFNTIGKQLDENTKSRRINDMYFGRLKELTTHTQLAPRLKFMVRDVLDLRANNWIPRREEVKAKTINEIHSEAEKNLGLRPGATVNIRNSRVVSGSPGNTSPGGFPINRPGFGGMMPGMPGTRKMPGMPGMDNDNWEVPRARPVPRGADVSGIQPAGRGQAPLVGKTSTLNARLLPQGTGGLISNKTSALLQGQGAGAGAGASAGGSTTRPVNFGHGLEPSGQVHKPITAATVLSPAERPQVPTASLKQDDLRKKTISLLEEYFSIRLLDEALQCVEELMSPAYHPEVVKEAISLALEKSPPCVEAVVKFLDYLLSRKVFTASDIETGCLLYASVLDDAGIDLPKAPVNFGEIIGKLVTSGGLDFQVVKEAIKKVEDDRFRKDIFDAVLKTISSNVSGQGLLDSLASNIEDCRSLAY | 808 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 28972978 | 28979343 | - | CrPI670011_06g021210.1 | Cre06g2121 | 501583 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2121 | 808 | Gene3D | - | 636 | 802 | - | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 174 | 194 | - | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 113 | 130 | - | - | |
Cre06g2121 | 808 | Gene3D | - | 210 | 445 | - | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Cre06g2121 | 808 | ProSiteProfiles | MI domain profile. | 642 | 764 | IPR003891 | - | |
Cre06g2121 | 808 | FunFam | Eukaryotic translation initiation factor isoform 4G-2 | 210 | 445 | - | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 112 | 204 | - | - | |
Cre06g2121 | 808 | SUPERFAMILY | ARM repeat | 212 | 446 | IPR016024 | - | |
Cre06g2121 | 808 | SUPERFAMILY | ARM repeat | 638 | 797 | IPR016024 | - | |
Cre06g2121 | 808 | SMART | if4_15 | 219 | 444 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cre06g2121 | 808 | Pfam | MIF4G domain | 219 | 444 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Cre06g2121 | 808 | SMART | ma3_7 | 643 | 755 | IPR003891 | - | |
Cre06g2121 | 808 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 57 | 806 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER) | |
Cre06g2121 | 808 | Pfam | MA3 domain | 643 | 755 | IPR003891 | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 150 | 173 | - | - | |
Cre06g2121 | 808 | MobiDBLite | consensus disorder prediction | 481 | 502 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0385 | Cre-Chr5:3508626 | Cre06g2121 | Cre-Chr6:28972978 | 1.30E-53 | dispersed | |
Cre06g1613 | Cre-Chr6:11772458 | Cre06g2121 | Cre-Chr6:28972978 | 9.40E-57 | dispersed | |
Cre03g0636 | Cre-Chr3:5282426 | Cre06g2121 | Cre-Chr6:28972978 | 4.70E-09 | transposed | |
Cre05g1786 | Cre-Chr5:29806691 | Cre06g2121 | Cre-Chr6:28972978 | 1.90E-282 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2121 | K03260 | - | csv:101207520 | 1394.79 |