Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2136 | ATGGAATGCTCTACTCAAAAACGCGTAGTTTATCTTGGTGCATATGATGATGAGGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGTCTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGAAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTTAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG | 873 | 49.03 | MECSTQKRVVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEKLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD | 290 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29134044 | 29136620 | + | CrPI670011_06g021360.1 | Cre06g2136 | 501598 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2136 | 290 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 42 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | ProSiteProfiles | AP2/ERF domain profile. | 78 | 136 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | SMART | rav1_2 | 2 | 48 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | SMART | rav1_2 | 78 | 142 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | Pfam | AP2 domain | 77 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | SUPERFAMILY | DNA-binding domain | 5 | 43 | IPR016177 | GO:0003677(InterPro) | |
Cre06g2136 | 290 | Gene3D | AP2/ERF domain | 77 | 138 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | Gene3D | AP2/ERF domain | 1 | 44 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | SUPERFAMILY | DNA-binding domain | 77 | 138 | IPR016177 | GO:0003677(InterPro) | |
Cre06g2136 | 290 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 6 | 190 | - | - | |
Cre06g2136 | 290 | MobiDBLite | consensus disorder prediction | 177 | 202 | - | - | |
Cre06g2136 | 290 | CDD | AP2 | 77 | 138 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2136 | 290 | FunFam | AP2-like ethylene-responsive transcription factor | 77 | 138 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2136 | Cre-Chr6:29134044 | Cre09g0328 | Cre-Chr9:3199921 | 2.70E-88 | dispersed | |
Cre06g2136 | Cre-Chr6:29134044 | Cre05g2383 | Cre-Chr5:35373934 | 1.80E-55 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53909 | PF00847 | AP2 | 1.50E-11 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2136 | K09285 | - | csv:101219103 | 523.857 |