Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2136 ATGGAATGCTCTACTCAAAAACGCGTAGTTTATCTTGGTGCATATGATGATGAGGAAGCAGCAGCCCATGCTTACGACCTTGCAGCACTAAAATACTGGGGCCAAGAAACCATTCTTAATTTTCCGTTAACGACGTACCAAAAAGAGCTGAAGGAAATGGAGGGCCAATCAAGAGAAGAATACATCGGGTCGTTGAGAAGAAAAAGCAGTGGTTTCTCTCGGGGGGTTTCTAAATACAGAGGCGTTGCGAGACACCATCACAATGGTAGATGGGAAGCTCGGATTGGCAGGGTGTTTGGCAACAAGTATCTCTATCTTGGAACATATGCGACGCAAGAAGAAGCGGCCACAGCGTATGATATCGCAGCCATAGAATACCGTGGACTTAACGCCGTTACCAATTTCGACCTAAGCCGTTACATCAAATGGCTAAAACCAAGCAACGACGTCGTTTATGACAACAACCACATCCTAACCGTCGATTCCATCCTCCCAAGCCCTAAACAAGAACTCGACCTAGGTCTCTTCCCATCGGACCAAAATCAAAGCAGCACCGATTCGGCGACGGCTGAACCAATTGCCGTACCTCCGTCGCACCGATCCACCACCACCACGTCAGCTCTCGGCCTCCTCCTCCAATCTTCCAAGTTCAAGGAAATGATGGAGATGAATTCGGCGACGGAGTGTCCGTCGACGCCGTCATCGTCGGAGAAGCTCGAACGGCGGCGGTGTTTGTTTCCCGATGATGTTCAGACTTTCTTTGCCTGTGAGACCTCAGGATCTTACTGCTATGGAGAAGCGGAGGATGCAATTTTTAGCGACTTTAATTCTTTCATTCCGCCGCCGCTATCGCATTACGATTTCGTGGATTAG 873 49.03 MECSTQKRVVYLGAYDDEEAAAHAYDLAALKYWGQETILNFPLTTYQKELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDIAAIEYRGLNAVTNFDLSRYIKWLKPSNDVVYDNNHILTVDSILPSPKQELDLGLFPSDQNQSSTDSATAEPIAVPPSHRSTTTTSALGLLLQSSKFKEMMEMNSATECPSTPSSSEKLERRRCLFPDDVQTFFACETSGSYCYGEAEDAIFSDFNSFIPPPLSHYDFVD 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29134044 29136620 + CrPI670011_06g021360.1 Cre06g2136 501598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2136 290 ProSiteProfiles AP2/ERF domain profile. 1 42 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 SMART rav1_2 2 48 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 SMART rav1_2 78 142 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 Pfam AP2 domain 77 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 SUPERFAMILY DNA-binding domain 5 43 IPR016177 GO:0003677(InterPro)
Cre06g2136 290 Gene3D AP2/ERF domain 77 138 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 Gene3D AP2/ERF domain 1 44 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 SUPERFAMILY DNA-binding domain 77 138 IPR016177 GO:0003677(InterPro)
Cre06g2136 290 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 190 - -
Cre06g2136 290 MobiDBLite consensus disorder prediction 177 202 - -
Cre06g2136 290 CDD AP2 77 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2136 290 FunFam AP2-like ethylene-responsive transcription factor 77 138 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2136 Cre-Chr6:29134044 Cre09g0328 Cre-Chr9:3199921 2.70E-88 dispersed
Cre06g2136 Cre-Chr6:29134044 Cre05g2383 Cre-Chr5:35373934 1.80E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53909 PF00847 AP2 1.50E-11 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2136 K09285 - csv:101219103 523.857