Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2140 ATGCTTCTTCCGAAACTCCTCTGTTTCATCATTCTCTCTTCTGCCTTCCTTTGCCTTTCTTATGAACCTCGAAACCCTGAAGTGGAAGCTTTGATTAATGTGAAGACAGCATTGAATGATCCGCACGGCGTTCTTAGCAATTGGGATGAGGACTCTGTGGACCCTTGTAGTTGGGCAATGATCACCTGCTCCCCTGAGAATCTTGTTATAGGATTAGGAGCTCCGAGCCAGTCTCTTTCCGGAAGCTTGTCTGGGGCGATTGGGAACCTCACAAATCTTCGCCAAGTGCTGCTGCAGAATAACAACATTTCTGGTCCAATTCCCATTGAACTTGGAACTCTCCCATTGCTTCAAACATTAGATCTCTCAAACAACCGGTTCTCCGGCCCAATACCAGCATCTTTTGCTCAGCTAAACGGTCTACGCTACCTGAGGTTGAACAATAATAGCTTGTCCGGGCCTTTTCCCTTGTCTTTGGCCAAAATCCCTCAGCTTGCTTTCTTGGACTTGTCTTTTAACAATCTCAGTGGACCAGTGCCTGTGTTTCCAGCCAGAACATTCAATGTGGTGGGAAATCCTATGATATGTGGAAGTGGTCCTAATGAAGGTTGCTCTGGCTCAGCCAATGCTGTTCCTCTTTCTTTCTCTCTAGAATCATCCCCTGGAAGACTTAGATCCAAAAGAATAGCAGTGGCACTTGGGGTCAGCCTCAGTTGTGCTTTTCTGATTCTCTTAGCACTTGGAATTCTTTGGCGCAGAAGAAATCAGAAGACCAAAACCATCTTAGACATCAATGTACACAATCATGAAGTTGGACTTGTGCGCTTAGGCAACCTGAGAAACTTCAGTTTCAAAGAGCTCCAGTTAGCAACAGACCATTTTAGTTCCAGAAATATACTCGGGGCTGGAGGCTTTGGTAATGTGTACAAGGGAAAGCTAGGAGATGGGACTATGGTGGCAGTCAAACGGCTAAAAGATGTAACGGGTACCACTGGAGAGTCCCAGTTTCGCACAGAATTGGAGATGATTAGCCTTGCAGTTCATCGCAATTTGCTTCGATTAATTGGTTATTGTGCCACTTCTCACGAGAGGCTCTTGGTGTACCCATACATGTCAAATGGCAGTGTAGCTTCCAGGCTCAGAGGTAAACCAGCCTTGGACTGGAACACGAGGAAGAGAATAGCAATTGGAGCTGCAAGAGGTCTGCTGTACCTCCATGAGCAATGTGATCCTAAGATAATCCATAGAGATGTGAAGGCTGCCAATGTGCTTCTAGATGACTACTGCGAAGCCGTAGTCGGTGATTTTGGACTTGCAAAGCTTCTTGACCATGCTGACTCTCATGTAACCACTGCTGTTCGTGGCACCGTTGGGCACATCGCTCCAGAGTATCTTTCAACTGGCCAATCTTCTGAGAAGACTGATGTGTTTGGGTTTGGCATTCTTTTAATAGAGCTAATTACTGGAATGAGAGCTCTTGAATTTGGGAAAACAATTAACCAAAAAGGCGCCATGCTTGAGTGGGTGAAAAAGATACAACAGGAAAAGAAAGTGGGATTGCTTGTGGACAGAGAACTAGGCAACAACTATGATCAGATTGAAGTTGGGGAAATGTTGCAAGTGGCTCTTCTTTGCACTCAGTATTTACCTGCTCATCGTCCCAAGATGTCGGAGGTGGTCCGAATGCTCGAAGGGGATGGCCTTGTGGAGAAATGGGCTGCTACCCACACTCATAATGATTTAAATGTCAACCTCTTTCATTCACGGAACACCTGCAAAAGTACATACAACCCAACAAATGCATTGAAGAATAATGGTAATGATCGAGATCATTCAAGCATGTTAAGTTTGACAATGGACGACGACGATGACGAGCGATCTTTAGACTCCTATGCCATGGAACTTTCCGGTCCGAGATAG 1920 45.52 MLLPKLLCFIILSSAFLCLSYEPRNPEVEALINVKTALNDPHGVLSNWDEDSVDPCSWAMITCSPENLVIGLGAPSQSLSGSLSGAIGNLTNLRQVLLQNNNISGPIPIELGTLPLLQTLDLSNNRFSGPIPASFAQLNGLRYLRLNNNSLSGPFPLSLAKIPQLAFLDLSFNNLSGPVPVFPARTFNVVGNPMICGSGPNEGCSGSANAVPLSFSLESSPGRLRSKRIAVALGVSLSCAFLILLALGILWRRRNQKTKTILDINVHNHEVGLVRLGNLRNFSFKELQLATDHFSSRNILGAGGFGNVYKGKLGDGTMVAVKRLKDVTGTTGESQFRTELEMISLAVHRNLLRLIGYCATSHERLLVYPYMSNGSVASRLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLIELITGMRALEFGKTINQKGAMLEWVKKIQQEKKVGLLVDRELGNNYDQIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLVEKWAATHTHNDLNVNLFHSRNTCKSTYNPTNALKNNGNDRDHSSMLSLTMDDDDDERSLDSYAMELSGPR 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29185208 29189184 + CrPI670011_06g021400.1 Cre06g2140 501602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2140 639 Pfam Protein tyrosine and serine/threonine kinase 298 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2140 639 CDD TM_EGFR-like 226 259 - -
Cre06g2140 639 Gene3D Transferase(Phosphotransferase) domain 1 371 582 - -
Cre06g2140 639 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Cre06g2140 639 SMART serkin_6 294 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2140 639 SUPERFAMILY Protein kinase-like (PK-like) 273 564 IPR011009 -
Cre06g2140 639 MobiDBLite consensus disorder prediction 597 628 - -
Cre06g2140 639 MobiDBLite consensus disorder prediction 597 613 - -
Cre06g2140 639 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524(InterPro)
Cre06g2140 639 Gene3D Phosphorylase Kinase; domain 1 264 370 - -
Cre06g2140 639 ProSiteProfiles Protein kinase domain profile. 294 569 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2140 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cre06g2140 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Cre06g2140 639 FunFam Somatic embryogenesis receptor-like kinase 1 371 583 - -
Cre06g2140 639 SUPERFAMILY L domain-like 25 189 - -
Cre06g2140 639 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Cre06g2140 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2140 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 7 639 - -
Cre06g2140 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Cre06g2140 639 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2140 Cre-Chr6:29185208 Cre11g0996 Cre-Chr11:7251364 3.10E-185 dispersed
Cre06g2140 Cre-Chr6:29185208 Cre04g1994 Cre-Chr4:37315942 1.70E-127 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64229 PF07714 PK_Tyr_Ser-Thr 9.20E-42 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2140 - - - 0.0