Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2161 ATGGGCATGGAATTGAGGAAGGAAAAGCTTGTTAGGTTTTATTCTGATCACAAAAAACATAAGAAAACGGCCATTGGAAGCAGCAACGAAGCAGTGCAACTTGAGAAGTCGTCGTCAAGATACTATATTCCGTCATCGACGTTCTTGATACCTGACAATGGACTAGGGGGAAGCAAAAGTAAATTTGCTGAAACTTTTAAAACTGAGAAGTCTAAGGTGTTTGCAGAGGACCATGAACCATGGAGCAAAAGAATACTAGACCCTGGTAGCAAAATTGTTTTGAAATGGAACAGGGTGTTCATTTGCTCATGCTTATTGGCACTCTTTGTTGACCCGCTATATCTATACTTGCCTTCTTTGAATGGGAGTGGGAAATCCCAATGTGTAAGGACAGACTGGAAATTGCGAATTGTTGTGACCTGTTTTCGGACTGTTGCAGATTTTTTCTATCTTCTGCACATGATTATAAAGTTCAGAACAGCTTATGTTGCTCCTAGTTCTCGTGTTTTTGGGAGAGGTGAGCTTGTGATGGATCCAAAGATGATAGCAAAGAGGTATATCAGATCTGATTTTTTTGTCGATCTAGTTGCCACCCTGCCTCTCCCTCAGATGGTCATCTGGTTCATCATACCCGCAACAAGAAGTCGTCTAACTGATCATAAAAACAATGCTCTTGCGCTTATTGTTCTGCTTCAATATATACCGAGATTGTATTTGATTTTCCCACTAAGTTCAGAAATCATTAAGGCAAATGGAGTTGTTACAAAGACAGCTTGGGCAGGAGCTGCTTATAATCTTCTACTTTATATGTTGGCTAGCCATGTTCTAGGTGCTACATGGTATTTGCTGTCAGTTGATAGATATACTTCATGCTGGAAATCATTTTGTAGGAAGAAGGAATATAATCCACTAGAATGTGACCTAACTTTTTTTGATTGCGATACATTTAACCATAATGACCGCAATACATGGGCAAATAGTACACTTGTTTTTGAAAAATGTGGCACTCATGGCACTCATGGAGTTTTCAATTATGGCATTTTTGAGAAAGCAATGTCGAAGAATGTCGTCTCTTCAAGCTTTATTGCAAAGTACTTCTACTGTTTGTGGTGGGGCTTGCAAAACCTGAGTTCATATGGACAAAATTTGGAAACAACGACGTTCATTGGTGAGACATTGTTTGCTGTACTCATTGCCATCTTAGGCCTTGTATTATTCGCCCATCTGATTGGGAATATGCAGACGTATCTGCAATCCCTTACCGTGAGGCTCGAAGAATGGAGACTAAAGCGAAGAGATACTGAAGAGTGGATGAGACATCGTCAACTCCCTGAAGACTTGAAACGACGAGTTCGACGTTTTGTGCAATATAAGTGGGTAGCAACAAGAGGAGTTGATGAAGAAACCATCTTGCAGAGCTTGCCTGCTGATCTTCGACGTGATATTCAGTGCCACCTATGTCTAGATCTCGTCCGACGAGTTCCTTTCTTCGCACAGATGGATGATCAGCTACTTGATGCAATATGTGAACGCCTGGTCTCCTCCTTGAGCACTGAAGGTACTTATATTGTACGGGAGGGTGACCCGGTAACAGAGATGCTGTTCATTATTCGAGGCAGATTGGAGAGTTCTACCACAAATGGAGGCCGCTCTGGTTTCTTTAACTCCATAACGTTACGTCCTGGCGACTTTTGTGGGGAGGAACTACTTTCTTGGGCTTTGCACCCAAAATCCACGACCAACTTGCCCTCCTCAACTAGAACAGTCAAGGCACTCAATGAAGTTGAAGCTTTTGCACTCTGTGCAGAAGATCTTAAATTTGTGGCCAACCAATTTAGACGTCTGCACAGTAAAAAATTGCAGCACACATTCCGCTTTTACTCTCATCATTGGAGAACATGGGCAGCCTGTTTTATTCAGGCTGCTTGGCGTCGCCATAAGAAAAGGATGATGGCAAAAGATCTCTTAATGAAAGAATCATTTACTTTATCAGAAAAAGTGGCTGACGAAACTAGCCAAGGAGAGGAACAATTCTCTGTTGTTTCAAATCCTTCTCAGACTAAAACGTATCTGGATATAACCTTGCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGCGCTCAGAGAATGAAAGACGACTTGCCAAAGTTACAAAAGCCCGAGGAACCCGACTTTTCCATTGAGCCAGATAGATAA 2199 41.97 MGMELRKEKLVRFYSDHKKHKKTAIGSSNEAVQLEKSSSRYYIPSSTFLIPDNGLGGSKSKFAETFKTEKSKVFAEDHEPWSKRILDPGSKIVLKWNRVFICSCLLALFVDPLYLYLPSLNGSGKSQCVRTDWKLRIVVTCFRTVADFFYLLHMIIKFRTAYVAPSSRVFGRGELVMDPKMIAKRYIRSDFFVDLVATLPLPQMVIWFIIPATRSRLTDHKNNALALIVLLQYIPRLYLIFPLSSEIIKANGVVTKTAWAGAAYNLLLYMLASHVLGATWYLLSVDRYTSCWKSFCRKKEYNPLECDLTFFDCDTFNHNDRNTWANSTLVFEKCGTHGTHGVFNYGIFEKAMSKNVVSSSFIAKYFYCLWWGLQNLSSYGQNLETTTFIGETLFAVLIAILGLVLFAHLIGNMQTYLQSLTVRLEEWRLKRRDTEEWMRHRQLPEDLKRRVRRFVQYKWVATRGVDEETILQSLPADLRRDIQCHLCLDLVRRVPFFAQMDDQLLDAICERLVSSLSTEGTYIVREGDPVTEMLFIIRGRLESSTTNGGRSGFFNSITLRPGDFCGEELLSWALHPKSTTNLPSSTRTVKALNEVEAFALCAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRHKKRMMAKDLLMKESFTLSEKVADETSQGEEQFSVVSNPSQTKTYLDITLLASRFAANTRRGAQRMKDDLPKLQKPEEPDFSIEPDR 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29450966 29456933 + CrPI670011_06g021610.1 Cre06g2161 501623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2161 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 713 - -
Cre06g2161 732 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Cre06g2161 732 SUPERFAMILY cAMP-binding domain-like 426 618 IPR018490 -
Cre06g2161 732 Gene3D Jelly Rolls 494 614 IPR014710 -
Cre06g2161 732 Pfam Cyclic nucleotide-binding domain 519 607 IPR000595 -
Cre06g2161 732 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Cre06g2161 732 CDD CAP_ED 496 627 IPR000595 -
Cre06g2161 732 MobiDBLite consensus disorder prediction 706 732 - -
Cre06g2161 732 Gene3D Helix hairpin bin 424 487 - -
Cre06g2161 732 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Cre06g2161 732 Gene3D - 113 421 - -
Cre06g2161 732 SMART cnmp_10 496 627 IPR000595 -
Cre06g2161 732 Pfam Ion transport protein 96 423 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre06g2161 732 SUPERFAMILY Voltage-gated potassium channels 88 418 - -
Cre06g2161 732 PRINTS EAG/ELK/ERG potassium channel family signature 409 418 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2161 732 PRINTS EAG/ELK/ERG potassium channel family signature 459 466 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2161 732 PRINTS EAG/ELK/ERG potassium channel family signature 271 281 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2161 732 PRINTS EAG/ELK/ERG potassium channel family signature 154 163 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cre06g2161 732 PRINTS EAG/ELK/ERG potassium channel family signature 391 402 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1597 Cre-Chr1:29018709 Cre06g2161 Cre-Chr6:29450966 3.00E-114 dispersed
Cre04g0995 Cre-Chr4:28540023 Cre06g2161 Cre-Chr6:29450966 1.80E-177 dispersed
Cre05g2807 Cre-Chr5:38797007 Cre06g2161 Cre-Chr6:29450966 4.90E-280 dispersed
Cre06g2161 Cre-Chr6:29450966 Cre06g2557 Cre-Chr6:33183457 3.00E-229 dispersed
Cre06g2161 Cre-Chr6:29450966 Cre10g1579 Cre-Chr10:29826647 2.40E-242 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2161 K27629 - csv:101218643 1410.59