Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2162 ATGGTGATGTGGCATATTTGGGAGTTTTACAATCCTGTGGTGTTTCGTAGGGGTGGTGGATCAGTAGGGGCTTTGCTCGAGTCTATCCATGGATTCCTCTCGGATTATAGGTGTCCAAATTTGACTATGGCAAGGTTGTCGGGTGGGCGGTGTGTTGCCGCGATGGCGAAGGTGGGAAGTGTTGATGATTGGAAACTGAAACTGAGGTGGGAGCAAATAATGTTGATAACACTCAGAGAAGCTGCTGCAGCTTCTTCTTCGCCCATTTCCTTCACCCTCTCCACGCAATCTCTTACCAATTCTAAGCGCTTCCTAAGACCTAGAATTTCACTCACCCGAGCTTCCTTCTCTGTTCCAGGCAAGCCCAGCGCCACCAAATCCTGGAACCTTGCCCTCATTTCCAACAGTTTTGAGAGCTCAGTTTTTGATCCGTTGGGCATCCGTCCAGATCTTTCTTCCGAATTAAGTAGTACGTGGGAAAATTTTCTTGGCTATTTTGGTCAAACATTTGATAGTGCTTCAAGCACAAAAAAAGATAAATCCCCCTCAGCTCGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCCTTGCCTGGAAAATTTCTACAGCTCTTGGGCTATTTAGCTCTTTCAAGGCTTGGAATCTATATACCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAATAGCTTATTGAGCACTTTAGATTCCTTTTCTGGAGGAGGCATTGGTAGGCTGGGGATATGCTCCCTTGGCATTGTTCCCTTCATCAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGTGAAGCAGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTCTACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTAACACTTGGCTCAGTCATTACAACGTACATTGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCGCTGCACAGGCATTCCAGGATGGTAACTATGTAGGATTGGTTGCTATCATGATATCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCGGAAAGGAAAATCCCCCTCAACTATGCCTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCCTTCAAGGTAAATAGTTCTGGTGTGATGCCGATCATTTTCTCGACATCAACATTAGCCCTTCCGGGTACTCTAGCTCGCTTCACGGGGTTATCAGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACATTCCTACAATTGGATCCTGATGATGTGAGTGAACAATTGAAGCGGCAGGGTGCTTCGATTCCCCTCGTCCGTCCAGGCAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGTCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGTCCTGCGGTGATTGAGCAAACAACACATTTGACGGCATTTCGAGGATTTGCGGGAACCTCTGTTCTTATACTTGTTGGTTGTGCTACAGACACTGCCAGAAAAGTACAAGCTGAGATAATTTCCCAGAAGTACAAGAATATAGAGTTCTACGACATTGATAGAGTCTGTGACATCGCAGCCCAAGCTCTTATAAGCGTTGGATTAAAGCAAGTAATTGATAAACTATACATCAGGGAGGAATTAGGCAGTAGGCTCCCGTAA 1947 44.74 MVMWHIWEFYNPVVFRRGGGSVGALLESIHGFLSDYRCPNLTMARLSGGRCVAAMAKVGSVDDWKLKLRWEQIMLITLREAAAASSSPISFTLSTQSLTNSKRFLRPRISLTRASFSVPGKPSATKSWNLALISNSFESSVFDPLGIRPDLSSELSSTWENFLGYFGQTFDSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTAAQAFQDGNYVGLVAIMISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRVCDIAAQALISVGLKQVIDKLYIREELGSRLP 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29457026 29464671 - CrPI670011_06g021620.1 Cre06g2162 501624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2162 648 Pfam SecY 262 593 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cre06g2162 648 ProSitePatterns Protein secY signature 2. 353 370 IPR030659 -
Cre06g2162 648 NCBIfam preprotein translocase subunit SecY 209 606 IPR002208 GO:0015031(InterPro)|GO:0016020(InterPro)
Cre06g2162 648 Hamap Protein translocase subunit SecY [secY]. 198 610 IPR026593 -
Cre06g2162 648 SUPERFAMILY Preprotein translocase SecY subunit 202 600 IPR023201 -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 302 325 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 360 383 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 260 280 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 579 597 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 210 228 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 334 359 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 490 512 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 451 470 - -
Cre06g2162 648 PRINTS Preprotein translocase SecY subunit signature 545 563 - -
Cre06g2162 648 ProSitePatterns Protein secY signature 1. 261 280 IPR030659 -
Cre06g2162 648 FunFam Preprotein translocase subunit SECY, chloroplastic 201 606 - -
Cre06g2162 648 Gene3D SecY subunit domain 201 606 IPR023201 -
Cre06g2162 648 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 201 609 IPR002208 GO:0005048(PANTHER)|GO:0006616(PANTHER)|GO:0008320(PANTHER)|GO:0009535(PANTHER)|GO:0015031(InterPro)|GO:0016020(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2162 K10956 - csv:101222431 998.808