Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2173 ATGGGATCGTCTTTCAGTTGCTGTGATTCTGAGAAAGTAGACCAAGGGTTGGGTGGAGGCAACAGTTCATGGAGGATGTATACGTACAAGGAGTTGCATGCAGCCACCAACGGTTTCCATGACGACAACAAGCTGGGAGAAGGAGGATTTGGAAGTGTTTATTGGGGAAAGACCACCGATGGCCTTCAGATAGCGGTGAAGAAGTTGAAAGCGATGAATTATAAGGCAGAAATGGAGTTTGCGGTGGAAGTGGAAGTGCTGGCGAGGCTGAGGCATAAGAATCTGTTGGGTCTGAGAGGCTATTGTGTGGGGACTGATCAAAGGCTTATTGTTTATGATTACATGCCAAATCTCAGCTTGTTGTCTCATCTTCATGGCCACTTTGCTTCTGAAGCTCTCTTGGATTGGAAAACAAGAATGAAAATTGCTCTTGGCTCTGCTGAAGGCATTTTGTATTTGCACCAAGAAGTAAGCCCCCACATAATCCACAGAGACATAAAAGCAAGCAATGTGCTACTAGACTCAGACTTTGAGCCATTAGTAGCTGATTTCGGGTTTGCAAAACTAATCCCAGAAGGGGTTAGCCACATGACAACTCGCGTCAAAGGGACCTTAGGTTATCTTGCTCCCGAATACGCCATGTGGGGCAAAGTTTCGGAGAGCTGTGACGTTTTCAGCTACGGCATTCTTTTACTCGAGCTGATGACCGGAAGGAAGCCGATCGAAAGACTCCCCGGCGGAGCAAAGAGAACCATTTCAGAATGGGTTAACATCACAATAAACAAAGACAGATTCAAAGACTTGGCTGATAGGAAGCTAAAGGGACAACTCAATTGGAAAGAGTTCGAACAAGTAATGCATTTGGCAATTATGTGTGTGCAAACCGAGGCAGAGAAACGGCCTACTATAAAACAAGTAGTGGATTGTTTGAAAGGTTTGATGGCTGATGCTGGAAATTACAACAAAGTGCCCCTATTAATGACTATTCCAAGTGTTAGATCATATGATAATAATACTAATGAAGATCGTCGACATCAGCTGGCTAGCAAAGAATTTCATGGTGGAGGAGGAGATGATCAAGACAGTTTTGATTATGGGGTTTTTAGTGCCATTGAAGAGCAGAGGATCATAAGAGAATATCCTTATAATAATAATAAACAACCTCCAAATTTTTGGAGAATGAATGCTTAA 1191 43.24 MGSSFSCCDSEKVDQGLGGGNSSWRMYTYKELHAATNGFHDDNKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNYKAEMEFAVEVEVLARLRHKNLLGLRGYCVGTDQRLIVYDYMPNLSLLSHLHGHFASEALLDWKTRMKIALGSAEGILYLHQEVSPHIIHRDIKASNVLLDSDFEPLVADFGFAKLIPEGVSHMTTRVKGTLGYLAPEYAMWGKVSESCDVFSYGILLLELMTGRKPIERLPGGAKRTISEWVNITINKDRFKDLADRKLKGQLNWKEFEQVMHLAIMCVQTEAEKRPTIKQVVDCLKGLMADAGNYNKVPLLMTIPSVRSYDNNTNEDRRHQLASKEFHGGGGDDQDSFDYGVFSAIEEQRIIREYPYNNNKQPPNFWRMNA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29568336 29571470 + CrPI670011_06g021730.1 Cre06g2173 501635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2173 396 SMART serkin_6 39 310 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2173 396 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Cre06g2173 396 SUPERFAMILY Protein kinase-like (PK-like) 21 330 IPR011009 -
Cre06g2173 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre06g2173 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 115 323 - -
Cre06g2173 396 Gene3D Phosphorylase Kinase; domain 1 11 114 - -
Cre06g2173 396 Pfam Protein kinase domain 39 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2173 396 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524(InterPro)
Cre06g2173 396 PANTHER OS01G0750732 PROTEIN 22 319 IPR050885 -
Cre06g2173 396 ProSiteProfiles Protein kinase domain profile. 39 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre06g2173 396 FunFam PTI1-like tyrosine-protein kinase At3g15890 11 114 - -
Cre06g2173 396 CDD STKc_IRAK 45 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0950 Cre-Chr5:8750622 Cre06g2173 Cre-Chr6:29568336 5.40E-110 dispersed
Cre06g2173 Cre-Chr6:29568336 Cre07g1603 Cre-Chr7:31509250 7.80E-115 dispersed
Cre11g1657 Cre-Chr11:27819523 Cre06g2173 Cre-Chr6:29568336 9.30E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64230 PF00069 Pkinase 7.10E-45 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2173 - - - 0.0