Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2174 ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCAGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTGAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGCCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA 1128 51.24 MGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPANNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDVQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29583603 29584826 - CrPI670011_06g021740.1 Cre06g2174 501636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2174 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270(InterPro)
Cre06g2174 375 CDD Bbox1_BBX-like 66 108 IPR049808 -
Cre06g2174 375 CDD Bbox1_BBX-like 22 65 IPR049808 -
Cre06g2174 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 16 360 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro)
Cre06g2174 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515(InterPro)
Cre06g2174 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270(InterPro)
Cre06g2174 375 Pfam CCT motif 302 344 IPR010402 GO:0005515(InterPro)
Cre06g2174 375 SMART bboxneu5 18 65 IPR000315 GO:0008270(InterPro)
Cre06g2174 375 SMART bboxneu5 66 108 IPR000315 GO:0008270(InterPro)
Cre06g2174 375 Pfam B-box zinc finger 62 108 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2174 Cre-Chr6:29583603 Cre08g0498 Cre-Chr8:17243131 3.20E-09 dispersed
Cre02g1172 Cre-Chr2:10905195 Cre06g2174 Cre-Chr6:29583603 3.60E-06 transposed
Cre05g2411 Cre-Chr5:35602804 Cre06g2174 Cre-Chr6:29583603 3.10E-07 transposed
Cre07g1886 Cre-Chr7:34293030 Cre06g2174 Cre-Chr6:29583603 8.30E-06 transposed
Cre07g1969 Cre-Chr7:35135698 Cre06g2174 Cre-Chr6:29583603 3.80E-28 transposed
Cre08g1331 Cre-Chr8:26391862 Cre06g2174 Cre-Chr6:29583603 4.70E-68 transposed
Cre11g1658 Cre-Chr11:27879163 Cre06g2174 Cre-Chr6:29583603 7.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53911 PF00643 zf-B_box 6.70E-07 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2174 - - - 0.0