Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2174 | ATGGGAATTGACGCTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGCCCCTGCCGCCGTCTATTGTCGTCCAGACTCTGCTTTCCTCTGCCTTCCCTGCGACGCCAAAATTCACTGCGCTAACAAGCTCGCCTCTCGCCATGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCTCCTGCTGTGGTTATGTGCAAGGCTGATGCTGCGGCTCTCTGTGTCACCTGCGATGCCGATATTCACTCTGCTAACCCACTGGCCCGTCGCCACGAGCGTGTCCCGGTCGAGCCTTTTTTCGACACGGCTGAATCAGTTGTGAAATCCTCCTCTGTTTTGAATTTTCTTGTCCCTAATGAAACCAACGCCAGTGTTTGCGACGGTGCCCATCACCACGAGGAAGTGGAGGTTGCCTCCTGGCTTTTATCCAACCCGTCTTTCAACTCTAAGCTTGTGGACGGCTCTGAAATCAAACCCCCTGGCGGTGATCAGTTGTTCTTCAATGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGCCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCTCTACGCCGGTGATTAACCATACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGCAGATCCAAGCTCAATTCATTCGGCTATCAACCTCAATCGCTGAGCCACAGTGTTTCCTCTTCCTCCCTAGAAGTCGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGTTGGGTCAAAACGCGAGTAACGGGGCGGATTCGGGGCTACCGTTATCAGGATCCGGCAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCGGAAACCCGGCCCAGAATCAAAGGCCGGTTCGCTAAACGGACTGATATGTTATCAGAGGTTGATGAAATCTATGGCTCGGCTGCTTCGTCTGTGTTCCTGACGGACGTCCAATACGGCGTCGTACCAACGTTTTGA | 1128 | 51.24 | MGIDADSVVKGFGGGWGVVAKPCDSCKTAPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNASVCDGAHHHEEVEVASWLLSNPSFNSKLVDGSEIKPPGGDQLFFNEMDSFIDFEYPNPANNHSAINDSVVPVQTKPLSTPVINHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPLGQNASNGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDVQYGVVPTF | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29583603 | 29584826 | - | CrPI670011_06g021740.1 | Cre06g2174 | 501636 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2174 | 375 | ProSiteProfiles | Zinc finger B-box type profile. | 23 | 65 | IPR000315 | GO:0008270(InterPro) | |
Cre06g2174 | 375 | CDD | Bbox1_BBX-like | 66 | 108 | IPR049808 | - | |
Cre06g2174 | 375 | CDD | Bbox1_BBX-like | 22 | 65 | IPR049808 | - | |
Cre06g2174 | 375 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 4 | 16 | 360 | IPR045281 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(PANTHER)|GO:0009909(InterPro) | |
Cre06g2174 | 375 | ProSiteProfiles | CCT domain profile. | 302 | 344 | IPR010402 | GO:0005515(InterPro) | |
Cre06g2174 | 375 | ProSiteProfiles | Zinc finger B-box type profile. | 61 | 108 | IPR000315 | GO:0008270(InterPro) | |
Cre06g2174 | 375 | Pfam | CCT motif | 302 | 344 | IPR010402 | GO:0005515(InterPro) | |
Cre06g2174 | 375 | SMART | bboxneu5 | 18 | 65 | IPR000315 | GO:0008270(InterPro) | |
Cre06g2174 | 375 | SMART | bboxneu5 | 66 | 108 | IPR000315 | GO:0008270(InterPro) | |
Cre06g2174 | 375 | Pfam | B-box zinc finger | 62 | 108 | IPR000315 | GO:0008270(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre06g2174 | Cre-Chr6:29583603 | Cre08g0498 | Cre-Chr8:17243131 | 3.20E-09 | dispersed | |
Cre02g1172 | Cre-Chr2:10905195 | Cre06g2174 | Cre-Chr6:29583603 | 3.60E-06 | transposed | |
Cre05g2411 | Cre-Chr5:35602804 | Cre06g2174 | Cre-Chr6:29583603 | 3.10E-07 | transposed | |
Cre07g1886 | Cre-Chr7:34293030 | Cre06g2174 | Cre-Chr6:29583603 | 8.30E-06 | transposed | |
Cre07g1969 | Cre-Chr7:35135698 | Cre06g2174 | Cre-Chr6:29583603 | 3.80E-28 | transposed | |
Cre08g1331 | Cre-Chr8:26391862 | Cre06g2174 | Cre-Chr6:29583603 | 4.70E-68 | transposed | |
Cre11g1658 | Cre-Chr11:27879163 | Cre06g2174 | Cre-Chr6:29583603 | 7.90E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53911 | PF00643 | zf-B_box | 6.70E-07 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2174 | - | - | - | 0.0 |