Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2196 ATGGCAACCCTCCAAATTTATGGCACCGAAACCGAAATCTCTGTGGAGTTTCTGGTAGATCGAATCATCGACCTTCACAAAAGCATCTCGGAGCTTGAAACCCTAAAGCCATGCAAGAAAGTGAACCTCCTCTTCACCAACCTAGTGAACTTGTGCATTTTGCCTTGTTCAATGGATGTCTCAACATTGCCACCAAATGTACAAGCCATTCGTGAGGGCCTCATAGTTCTATGTGGCCAAGCTGAAAGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCCAAACCTCTCAACAATCTCACTCTATTTCCATATTACCACAACTACATCAAATTAGCCAACCTTGAAAACAAGATTTTGAAAGACAATGGAGTTGTCAATCCAAAGAAGGTAGCTTTTGTTGGGTCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGAAACACATGAAGGGCACGCATTTTGATAACTATGATGTAGACAGCGTGGCGAATGACGTGGCGGGAAAGATCGTGGGATCGGACGCTGAGCTGGTGGGAAGAATGAAGTTTTGGACGAGGGATATTGTTGAGGTAAAAGAAGAGCTTGGAGGATATGATTGTGTGTTTTTGGCGGCTCTTGTGGGGATGAAGAAGGAAGATAAAGTGAAGATTATAAAGCATTTAAGAAAGTATATGAAAGAAGGTGGGATTGTGGTAGTGAGAAGTGCTAAAGGAGGTAGAGCATTTTTGTACCCTGTGGTTGAAGTTGGAGATTTGGTTGGCTTTGAGATTCTCTCTATTTTTCATCCCACTGATGATGTTGTTAATTCGGTTATCTTAGTTCGCAAGCCTGTGATTATATGA 858 41.96 MATLQIYGTETEISVEFLVDRIIDLHKSISELETLKPCKKVNLLFTNLVNLCILPCSMDVSTLPPNVQAIREGLIVLCGQAESLLELEFSTLLSKIPKPLNNLTLFPYYHNYIKLANLENKILKDNGVVNPKKVAFVGSGPLPLTSIIMAMKHMKGTHFDNYDVDSVANDVAGKIVGSDAELVGRMKFWTRDIVEVKEELGGYDCVFLAALVGMKKEDKVKIIKHLRKYMKEGGIVVVRSAKGGRAFLYPVVEVGDLVGFEILSIFHPTDDVVNSVILVRKPVII 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29771962 29772819 - CrPI670011_06g021960.1 Cre06g2196 501658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2196 285 Gene3D Vaccinia Virus protein VP39 14 282 IPR029063 -
Cre06g2196 285 PANTHER NICOTIANAMINE SYNTHASE 3 12 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cre06g2196 285 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 285 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cre06g2196 285 Pfam Nicotianamine synthase protein 15 282 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cre06g2196 285 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 241 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1813 Cre-Chr2:31452405 Cre06g2196 Cre-Chr6:29771962 1.10E-66 dispersed
Cre06g2196 Cre-Chr6:29771962 Cre03g2034 Cre-Chr3:37358506 4.00E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2196 K05953 - csv:101209464 486.493