Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2199 ATGGCGGCCGACGACGATTCCTCACCGGAGTTCATATTCCGGTCAAAACTCCCCGACATCCCCATCCCCACCCACCTCCCCTTGCACTCATATTGCTTCGAAAAAATCTCCGAATTCAAATACCGTCCATGTCTAATCAACGCCGCCACGGGCAACACCTATACCTACGACGAAGTCCACATAACATCCCGCCGAGTGGCTGCTGGTCTTCACAAGTTAGGCATCGGAAAAGGCGACGTCATCATGCTCCTCCTCCAAAACACCCCACAGTTCGTTTTAGCCTTCCTCGGCGCCTCCTACCTGGGCGCCGCCACCACGCCGGCGAACCCATTCTTCACGCCGACGGAAATTGCAAAACAAGCGACGTCATCCGGCGCCAAACTTATCATAACCCAAGCCGCGTTTGCAGAAAAAGTGAAAAAACTATCTCAAGAAAACAAGGCGATCATCAAAGTAATCTTCATCGACGATGACCCTCCGCCGGACGGAGGATATCATTTTTCGTCGTTGACTGATGACGTGGCAAAAGAGGAGGAAAGGGAAATGGGAGATGTGAAAATCAGCCCAGACGACGTCGTTGCGTTGCCTTATTCGTCTGGGACCACCGGTCTTCCAAAAGGAGTTATGCTGACTCATAAAGCCCTAGTGACCAGCGTGGCACAACAGGTGGACGGTGAGAACCCACACCTATACATCCGAAGCGACGACGTCGTTCTGTGCGTGCTTCCTTTGTTTCACATATATTCCCTAAACTCAATCATGATGTGTTCGTTACGAGTAGGAGCTGCGATTTTAATCGTACAAAAATTCGACGTTAATTCGCTTCTGGAATTGATTCCTAAATATAGAGTCACCATTGCACCCATTGTTCCTCCTATTGTACTTGCAATTGCCAAGAGTCCGGCTCTGGACCATTACGACATGTCGTCCATACGTATTGTGATGTCGGGAGCCGCGCCCTTGGGGAAAACTCTTGAAGATGCCTTTAGAGCCAAGCTTTCCCATGTCATTCTCGGCCAGGGATACGGAATGACGGAGTCGGGGTCCGCGATGACAATGTCGTTGGCATTTGCAAAGGAGAGGTTCGAGATAAAATCGGGAGGTTGTGGGACGTTAATGAGAAATTCAGAGATGAAGATTGTAAACCCTCAAACGGGAGCGTCTCTTCCAAGGAATCAAGCTGGGGAGATTTGTATTAGAAGTCCTCAGATTATGAAAGGATACCTCAACGACGAAGAGGCCACGAAGGGCATAATTGACAAAGATGGATGGCTGCACACCGGCGATATAGGTTTCGTCGATGACGACGACGAGGTCTTCATCGTCGATCGTCTCAAGGAACTGATCAAATACAAAGGCTTCCAAGTGGCGCCGGCGGAGTTGGAAGCCCTGCTTATATCCCACGGTCGCATCGCTGATGCCGCGGTTATACCTATGAAAGATGAAGTTGCTGGAGAGGTTCCGGTTGCGTTCATTGTCCGATCCGACGGTTCCAAAATCACAGAGGATGAAATTAAGCAATACATCTCCAAACAGGTTGTGTTCTATAAGAGGATTAATCGTGTCTTCTTCGTGGATTCTATTCCTAAAAGTCAATCTGGCAAAATCTTACGGAGACAACTTAGAGCTTTACTCGCAGCTAGTATTCCTAATTAA 1656 48.91 MAADDDSSPEFIFRSKLPDIPIPTHLPLHSYCFEKISEFKYRPCLINAATGNTYTYDEVHITSRRVAAGLHKLGIGKGDVIMLLLQNTPQFVLAFLGASYLGAATTPANPFFTPTEIAKQATSSGAKLIITQAAFAEKVKKLSQENKAIIKVIFIDDDPPPDGGYHFSSLTDDVAKEEEREMGDVKISPDDVVALPYSSGTTGLPKGVMLTHKALVTSVAQQVDGENPHLYIRSDDVVLCVLPLFHIYSLNSIMMCSLRVGAAILIVQKFDVNSLLELIPKYRVTIAPIVPPIVLAIAKSPALDHYDMSSIRIVMSGAAPLGKTLEDAFRAKLSHVILGQGYGMTESGSAMTMSLAFAKERFEIKSGGCGTLMRNSEMKIVNPQTGASLPRNQAGEICIRSPQIMKGYLNDEEATKGIIDKDGWLHTGDIGFVDDDDEVFIVDRLKELIKYKGFQVAPAELEALLISHGRIADAAVIPMKDEVAGEVPVAFIVRSDGSKITEDEIKQYISKQVVFYKRINRVFFVDSIPKSQSGKILRRQLRALLAASIPN 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29800320 29804382 - CrPI670011_06g021990.1 Cre06g2199 501661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2199 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 446 - -
Cre06g2199 551 ProSitePatterns Putative AMP-binding domain signature. 195 206 IPR020845 -
Cre06g2199 551 Pfam AMP-binding enzyme C-terminal domain 460 535 IPR025110 -
Cre06g2199 551 Gene3D - 10 446 IPR042099 -
Cre06g2199 551 Gene3D - 447 548 IPR045851 -
Cre06g2199 551 SUPERFAMILY Acetyl-CoA synthetase-like 15 547 - -
Cre06g2199 551 FunFam 4-coumarate--CoA ligase 2 447 548 - -
Cre06g2199 551 CDD 4CL 22 541 - -
Cre06g2199 551 Pfam AMP-binding enzyme 37 409 IPR000873 -
Cre06g2199 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 542 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2199 Cre-Chr6:29800320 Cre10g1429 Cre-Chr10:27987157 5.80E-209 dispersed
Cre05g1400 Cre-Chr5:16503279 Cre06g2199 Cre-Chr6:29800320 9.90E-24 transposed
Cre09g1739 Cre-Chr9:35711441 Cre06g2199 Cre-Chr6:29800320 2.70E-23 transposed
Cre09g2237 Cre-Chr9:41532277 Cre06g2199 Cre-Chr6:29800320 2.30E-50 transposed
Cre11g1688 Cre-Chr11:28275371 Cre06g2199 Cre-Chr6:29800320 8.00E-203 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2199 K01904 - csv:101218077 875.159