Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2214 | ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCGATAAAATTCAGAGGCCTCAATGCCGTTACAAACTTCGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGACTCCGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCGTCGTCAACCGCAACCTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGTAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATACTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATCTTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATCACCGACTTAGCATCGAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA | 1458 | 49.38 | MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSDSAASDGGSRSAEERDVHHSPPSSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDLPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME | 485 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 29955321 | 29959121 | + | CrPI670011_06g022140.1 | Cre06g2214 | 501676 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2214 | 485 | Gene3D | AP2/ERF domain | 240 | 300 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | Gene3D | AP2/ERF domain | 138 | 206 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | CDD | AP2 | 239 | 300 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | MobiDBLite | consensus disorder prediction | 313 | 371 | - | - | |
Cre06g2214 | 485 | ProSiteProfiles | AP2/ERF domain profile. | 240 | 298 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 93 | 362 | - | - | |
Cre06g2214 | 485 | MobiDBLite | consensus disorder prediction | 47 | 71 | - | - | |
Cre06g2214 | 485 | SMART | rav1_2 | 240 | 304 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | SMART | rav1_2 | 138 | 210 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | ProSiteProfiles | AP2/ERF domain profile. | 138 | 204 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | MobiDBLite | consensus disorder prediction | 313 | 333 | - | - | |
Cre06g2214 | 485 | SUPERFAMILY | DNA-binding domain | 137 | 206 | IPR016177 | GO:0003677(InterPro) | |
Cre06g2214 | 485 | CDD | AP2 | 137 | 206 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | MobiDBLite | consensus disorder prediction | 85 | 131 | - | - | |
Cre06g2214 | 485 | FunFam | AP2-like ethylene-responsive transcription factor | 239 | 300 | - | - | |
Cre06g2214 | 485 | PRINTS | Ethylene responsive element binding protein signature | 280 | 300 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | PRINTS | Ethylene responsive element binding protein signature | 139 | 150 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | Pfam | AP2 domain | 241 | 290 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | Pfam | AP2 domain | 139 | 196 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre06g2214 | 485 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 137 | 206 | - | - | |
Cre06g2214 | 485 | MobiDBLite | consensus disorder prediction | 347 | 371 | - | - | |
Cre06g2214 | 485 | SUPERFAMILY | DNA-binding domain | 239 | 300 | IPR016177 | GO:0003677(InterPro) | |
Cre06g2214 | 485 | MobiDBLite | consensus disorder prediction | 101 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g2383 | Cre-Chr5:35373934 | Cre06g2214 | Cre-Chr6:29955321 | 9.00E-65 | dispersed | |
Cre06g2214 | Cre-Chr6:29955321 | Cre11g1355 | Cre-Chr11:15777955 | 9.30E-102 | dispersed | |
Cre06g2214 | Cre-Chr6:29955321 | Cre08g1616 | Cre-Chr8:28644650 | 4.20E-94 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53916 | PF00847 | AP2 | 3.50E-13 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2214 | K09285 | - | csv:101210453 | 671.003 |