Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2214 ATGAATTCTTCTTCTTCAGCTTCTCCAGATTGGCTTGCTTTCTCTCTCTCCAATAATCCCAACTCTCTTTCTCTCTTCCATCATCATCCTAATTCTACTGATCTCTCTATCTTCTCCCCCACCGCCCCCAAGCTTGAGGACTTTCTCCGGGGAGCTTCCACTCCTCCGCCGCCGCCTTCGCCTTCTCCCTTTCACTTTTCTCCCCATCAATCTGAGATTTGTGATTCTGATCTCAAAACTATAGCTGCTAGTTTCCTCCATGGACCACCAACCACCCATTTCCCTGAGCAACACTTTCACCATCTTCACGCGCCACCGCCACCGCCACCGCCACCGCCTCCTACTCAATCCGATACTTCACCGCCCCCACCTCCTAAGAAGGCCGTTGATACTTTTGGCCAACGCACCTCTATTTACCGCGGTGTTACAAGGCATAGATGGACTGGTCGATATGAAGCTCATTTGTGGGATAATAGTTGCAGGAGAGAAGGTCAGAGTAGAAAAGGAAGACAAGTTTATTTGGGTGGTTATGACAAAGAAGAAAAAGCAGCCAGAGCTTATGATCTCGCCGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTTCCGGTGTCGAACTACGAAAAAGAACTGGAGGATATGAAGAACATGACCAGACAAGAATTTGTTGCTTCATTAAGAAGGAGAAGCAGCGGTTTTTCTAGAGGAGCATCTATATACAGAGGTGTAACAAGGCACCACCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGCAATAAAGATCTCTATCTTGGGACATTCAGCACTCAGGAAGAAGCAGCTGAAGCCTATGATATAGCAGCGATAAAATTCAGAGGCCTCAATGCCGTTACAAACTTCGACATCAGTCGTTACGACGTGAAGAGCATTGCCAGCAGCAACCTCCCCATCGGAGGGATGTCGAGCACCAAATCCAAAACCACCTCCGACTCCGCTGCCTCGGACGGAGGCAGCCGATCGGCCGAAGAACGTGACGTCCATCATTCTCCTCCGTCGTCAACCGCAACCTTCATCTCGTCGCAGCCGAACAACAACTCCTCCTCGAGTAATCTTAGCTTTGCAATGCCCATCAAACAAGACCCATCGGATCAATACTGGTCTATCCTCGGCTACAATAACCCCAGCGCCTACAACACAAACCTCCCAAAACCCGACGATCTTCCACCATTGTCGTCGTCAATGTTTCAACAACCTGGATCCACAATGTTTCCTACCATCACCGACTTAGCATCGAGCGGATCACCGCTGACCGAAGGCGGGATGTACGTACAGCAGCAGCAACAACAATATGCAACACCGATTGCATTAAGTAGCGGAATAAGCATTGAGATTGGGCAATCAATGAGGGGGTTCGAAGCTCATGCAAAGCCAAGCCTTTTTCAGACGCCAATATTTGGAATGGAATGA 1458 49.38 MNSSSSASPDWLAFSLSNNPNSLSLFHHHPNSTDLSIFSPTAPKLEDFLRGASTPPPPPSPSPFHFSPHQSEICDSDLKTIAASFLHGPPTTHFPEQHFHHLHAPPPPPPPPPPTQSDTSPPPPPKKAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSNYEKELEDMKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSSTKSKTTSDSAASDGGSRSAEERDVHHSPPSSTATFISSQPNNNSSSSNLSFAMPIKQDPSDQYWSILGYNNPSAYNTNLPKPDDLPPLSSSMFQQPGSTMFPTITDLASSGSPLTEGGMYVQQQQQQYATPIALSSGISIEIGQSMRGFEAHAKPSLFQTPIFGME 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 29955321 29959121 + CrPI670011_06g022140.1 Cre06g2214 501676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2214 485 Gene3D AP2/ERF domain 240 300 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 Gene3D AP2/ERF domain 138 206 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 CDD AP2 239 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 MobiDBLite consensus disorder prediction 313 371 - -
Cre06g2214 485 ProSiteProfiles AP2/ERF domain profile. 240 298 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 93 362 - -
Cre06g2214 485 MobiDBLite consensus disorder prediction 47 71 - -
Cre06g2214 485 SMART rav1_2 240 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 SMART rav1_2 138 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 ProSiteProfiles AP2/ERF domain profile. 138 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 MobiDBLite consensus disorder prediction 313 333 - -
Cre06g2214 485 SUPERFAMILY DNA-binding domain 137 206 IPR016177 GO:0003677(InterPro)
Cre06g2214 485 CDD AP2 137 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 MobiDBLite consensus disorder prediction 85 131 - -
Cre06g2214 485 FunFam AP2-like ethylene-responsive transcription factor 239 300 - -
Cre06g2214 485 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 PRINTS Ethylene responsive element binding protein signature 139 150 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 Pfam AP2 domain 241 290 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 Pfam AP2 domain 139 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre06g2214 485 FunFam AP2-like ethylene-responsive transcription factor ANT 137 206 - -
Cre06g2214 485 MobiDBLite consensus disorder prediction 347 371 - -
Cre06g2214 485 SUPERFAMILY DNA-binding domain 239 300 IPR016177 GO:0003677(InterPro)
Cre06g2214 485 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2383 Cre-Chr5:35373934 Cre06g2214 Cre-Chr6:29955321 9.00E-65 dispersed
Cre06g2214 Cre-Chr6:29955321 Cre11g1355 Cre-Chr11:15777955 9.30E-102 dispersed
Cre06g2214 Cre-Chr6:29955321 Cre08g1616 Cre-Chr8:28644650 4.20E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53916 PF00847 AP2 3.50E-13 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2214 K09285 - csv:101210453 671.003