Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2228 ATAGGAGAGGGGGAGGGGAATATGGCGGCCGGAGAAGAGGAGGTGGCGGCGGCGGCGGCGTCGGGAGTGGGCGGAAAGAAGGGTGGTGGGTTGCAGAAAAGTTACTTTGATGTGTTGGGGATTTGTTGTTCTTCGGAAATTCCAGTGATTGAGAATATATTGAAGGAGATTGAAGGGATTAAAGAGATTAGAGTGATTGTTGCTACAAGAACTGTCATTGTTCTTCATGATAATCTTCTTGTTTCTCAAACACAAATTGTTAAAGCCCTAAATCAAGCAAGATTTGAAGCGAACGTTAGAGCGTACGGAGATCAGAAAGATCACCGGAAAAAATGGCCGAGCCCGTATGCGGTGGCGAGTGGGATGTTGCTGCTATTGTCGTTACTGAAATATGTGAATCCTATTTTCCGATGGGTAGCTTTAGCCGCCGTTGCCGCCGGAATCTGGCCCATTGTCCTCAAAAGCTTCGCCGCCGTTCGCCATCTCAGAATCGACATCAACATTCTTGCTTTAATTGCAGTGATCGGGACAATTGTGCTGAAGGATTATTTGGAAGCGGCCACCATCGTCTTCCTCTTCACCATCGCCGAATGGCTCGAGTCCAGAGCCGCCCACAAGGCGAACGCCGTCATGTCATCCCTTCTAAGCATCGCTCCTCAGAAAGCGGTTCTAGCCGACACCGGCGAAGTTGTCGGCGCCGACGAGGTCAAATTGGGGACTCTGCTGGCTGTGAAGGCCGGCGAAGACATTCCCATTGATGGAATCGTTGTGGAAGGAAAATGCGAAGTGGATGAGAAAACACTTACTGGTGAATCTTTCCCTGTTCCCAAACAGAAGAATTCCACTGTTTGGGCTGGTACCATTAATCTAAATGGCTATGTTACTGTAAAGACTACTGCGCTTGCTGAAGACTGTGTGGTGGCCAAAATGGCTAAGCTGGTTGAAGAGGCCCAAAACAATAAATCTAGGACTCAAAGGTTCATTGACAAATGTGCCAAATTCTATACTCCAGCTGTTATAATCATATCAACTTGCATAGTAGTGATTCCAATTGCTTTGAGACTTCCCAATCACAGCCATTGGTTTCACTTGGCCCTGGTTGTGTTAGTAAGCGCGTGTCCCTGTGCACTCATCCTTTCCACGCCTGTTGCGTCTTTCTGTGCACTTACTAAGGCAGCAACATCTGGTCTTTTAATTAAAGGAGGTGACTACCTTGAAACTCTTGGCAAAATTAAGATCATGGCCTTTGATAAAACTGGAACAATAACAAGAGGTGAATTTATGGTGACTGAATTTCAAGTTCTTGATAAGGACAATATAAGCTTAGACACATTGCTATATTGGGTGTCAAGCATTGAGAGCAAGTCCAGTCATCCAATGGCAGCTGCACTTGTTGACCATGGAAGATCACTATCCGTTGATCCCAAACCTGAAAATGTGGATGACTTTCAAAATTTTCCTGGAGAAGGTGTTTATGGGAGAATTGATGGGAAAGACATTTATATTGGAAATCGAAAAATTGCTACAAGAGCCAACTGTGCAACAGTCCCAGAGATCAAAGATGAAGCAAAGGATGGGAGGACTGTTGGATACATATTCTGTGGAGCTACTGCAGCTGGAATCTTTAGTCTATCTGATTCTTGCAGAACAGGAGCTAAGGAGGCCATGGATGAGCTTCGATCTCTCGGTATAAAAACAGCCATGCTCACAGGAGACTGTTCTGCAGCAGCCTTGCAAGCACAAAAAGAATTGGGAAAGGCTTTACAAACAGTCCATGCAGAACTTCTACCTGAAGACAAGACAAGACTCATCAATGACTTTAAAAAGGAGGGACCAACAGCTATGATTGGAGATGGTTTGAACGACGCCCCTGCCTTGGCCACAGCTGATATTGGTATATCAATGGGAATCTCAGGTTCAGCCCTTGCAATAGAAACTGGAGATGTAATTCTTATGACTAATGATATCAGGAAAGTTCCAAAAGCCATTCGACTTGCAAGAAGAGCTAATAATAAAGTAATCGAAAATGTGATTCTGTCGATTGCTCCTAGGATTGCTATACTTGGCCTAGCATTTGGTGGTCATCCACTTGTTTGGGCAGCAGTTCTTGCTGATGTCGGTGCCTGTGTGCTAGTTATCCTCAACAGTATGCTCCTGCTGCGAGGAACTGACGGACCCAAGGGGAAAAAAGCTGGCAAGTTTTCTGCTACTCACTGTTCCTCCAAACATAAATGCTGTGATGTTAGTAGCCATTCAGATGAATATAGTGGCCACACCCATGATCAACGGTGCGACAATCACAGTTCCCACTCTTCTAGACATCGTCACCGTCACCATCACCATGACCACGAGGACTGCACCTCTCTCAAGAAAACTCATGATGGCTGTTTACCTCAGAACCATGCTTCCAAGTGTGTCTCCAGGTTGAAAAATTCAAGTTTATGCAAGAAAAGTAAACTTGTGGACTCAAGTTCTAAGGTAGATGGTTCTACCGGCAATGTAAACCTCTGTGAACATGATCACGAGTGCAACACTGACAGCTCCGACTCTTCTAGTCATCATCACCACCACCACCATCATCATCATGAGCACGAAGACTGTGGCTCTCTCAAGAAAACTCATGAAGGTTGCTTACCTCAGAACTGTGCTTCCAAGTGTGATTCCGGGATGAAGACTTCAAGTTCATGCAAGAAAAGTAAACTCGTGGAGTCAAGTTCTAAGGTAGATGATTCTGCAGGCAGTCTAAAACTGTGTGAACATGGACATGTCCATAACGACCAGCCTGCTGATCATGACCATCATGCTTATTCTTCGTGCGCACATCATGTCGAGAACAAACATTGCTCTCCAAAGATTACACAAGAGTTTTGCTCGTTTCAGAAGCGTGCATCAAATTCATGTGAGAAAATCAAGTGCACAAGCTCAGCTGCAACCCTTGATGGTTCTGCTGTCATTCTTGAGCTCCATGAAAGTGGATGTTGTTCTCATAATGACCAATCTGCTCAACATGATCATGACATCCAAACTCCCAAGTGTGATTTGGATGACAGCCACTCATCCAGTCCTGAGCATCATGTTGGTAATGGTTGTAGCTCTCAAAAGAACCATGAGCACTGCCACCAAGGAAGCTTCGACACTTCTGATTTCATCTTGGAATCCCATGAAAAGCACAGGAAAAATTGCAGTGGACCTTGTAAATCAAAATCAATAAGCGGGTGCACAGACGATGAATGCAGGGAAAAGGTTGAAATGATAGATGATTGCGCTGAAGCAAACAGGCACCACAAAACGAAACAACATCATTGCGATACTCATTTGAGTCTTCAAAATGAAGGGGATCATCCTCATTGTAAGGCATCAAATGGAGATAATAATGGAGCAATCAACAATACAGTTAATATCGAGCTCGAAGCACACCATTCAAACCCAGAATGCCCCAGCACTTGTAATAAGGCTTCGGAAAACAATGGGACAAACAACTGTAAAAGCTGCAAAAGGGGAAGCTCACAACTCAAAATTGGAAAATCTTGTGCAGGTTTGGATAAGAGAAAAATGGGTGGGTGTTGTAAGAGCTACATGAAGGAGTGTTGTAGGAAGCATGGCGATATCAGAATGGCGGTCCGAGGAGGCTTAAATGAAATTATTATAGAATAG 3654 44.61 IGEGEGNMAAGEEEVAAAAASGVGGKKGGGLQKSYFDVLGICCSSEIPVIENILKEIEGIKEIRVIVATRTVIVLHDNLLVSQTQIVKALNQARFEANVRAYGDQKDHRKKWPSPYAVASGMLLLLSLLKYVNPIFRWVALAAVAAGIWPIVLKSFAAVRHLRIDINILALIAVIGTIVLKDYLEAATIVFLFTIAEWLESRAAHKANAVMSSLLSIAPQKAVLADTGEVVGADEVKLGTLLAVKAGEDIPIDGIVVEGKCEVDEKTLTGESFPVPKQKNSTVWAGTINLNGYVTVKTTALAEDCVVAKMAKLVEEAQNNKSRTQRFIDKCAKFYTPAVIIISTCIVVIPIALRLPNHSHWFHLALVVLVSACPCALILSTPVASFCALTKAATSGLLIKGGDYLETLGKIKIMAFDKTGTITRGEFMVTEFQVLDKDNISLDTLLYWVSSIESKSSHPMAAALVDHGRSLSVDPKPENVDDFQNFPGEGVYGRIDGKDIYIGNRKIATRANCATVPEIKDEAKDGRTVGYIFCGATAAGIFSLSDSCRTGAKEAMDELRSLGIKTAMLTGDCSAAALQAQKELGKALQTVHAELLPEDKTRLINDFKKEGPTAMIGDGLNDAPALATADIGISMGISGSALAIETGDVILMTNDIRKVPKAIRLARRANNKVIENVILSIAPRIAILGLAFGGHPLVWAAVLADVGACVLVILNSMLLLRGTDGPKGKKAGKFSATHCSSKHKCCDVSSHSDEYSGHTHDQRCDNHSSHSSRHRHRHHHHDHEDCTSLKKTHDGCLPQNHASKCVSRLKNSSLCKKSKLVDSSSKVDGSTGNVNLCEHDHECNTDSSDSSSHHHHHHHHHHEHEDCGSLKKTHEGCLPQNCASKCDSGMKTSSSCKKSKLVESSSKVDDSAGSLKLCEHGHVHNDQPADHDHHAYSSCAHHVENKHCSPKITQEFCSFQKRASNSCEKIKCTSSAATLDGSAVILELHESGCCSHNDQSAQHDHDIQTPKCDLDDSHSSSPEHHVGNGCSSQKNHEHCHQGSFDTSDFILESHEKHRKNCSGPCKSKSISGCTDDECREKVEMIDDCAEANRHHKTKQHHCDTHLSLQNEGDHPHCKASNGDNNGAINNTVNIELEAHHSNPECPSTCNKASENNGTNNCKSCKRGSSQLKIGKSCAGLDKRKMGGCCKSYMKECCRKHGDIRMAVRGGLNEIIIE 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30154281 30160859 + CrPI670011_06g022280.1 Cre06g2228 501690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2228 1217 SUPERFAMILY Calcium ATPase, transmembrane domain M 166 409 IPR023298 -
Cre06g2228 1217 MobiDBLite consensus disorder prediction 1005 1022 - -
Cre06g2228 1217 Gene3D - 30 101 - -
Cre06g2228 1217 SUPERFAMILY Calcium ATPase, transduction domain A 229 314 IPR008250 -
Cre06g2228 1217 Gene3D - 426 548 IPR023299 GO:0000166(InterPro)
Cre06g2228 1217 ProSitePatterns Hypothetical cof family signature 2. 616 638 - -
Cre06g2228 1217 ProSiteProfiles Heavy-metal-associated domain profile. 32 98 IPR006121 GO:0046872(InterPro)
Cre06g2228 1217 SFLD p-type atpase 398 668 IPR044492 -
Cre06g2228 1217 PRINTS P-type cation-transporting ATPase superfamily signature 264 278 - -
Cre06g2228 1217 PRINTS P-type cation-transporting ATPase superfamily signature 415 429 - -
Cre06g2228 1217 PRINTS P-type cation-transporting ATPase superfamily signature 562 572 - -
Cre06g2228 1217 PRINTS P-type cation-transporting ATPase superfamily signature 616 635 - -
Cre06g2228 1217 PRINTS P-type cation-transporting ATPase superfamily signature 640 652 - -
Cre06g2228 1217 SUPERFAMILY HMA, heavy metal-associated domain 29 103 IPR036163 GO:0046872(InterPro)
Cre06g2228 1217 Gene3D - 204 318 - -
Cre06g2228 1217 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 31 912 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Cre06g2228 1217 Pfam haloacid dehalogenase-like hydrolase 411 630 - -
Cre06g2228 1217 ProSitePatterns Anaphylatoxin domain signature. 1163 1197 IPR000020 GO:0005576(InterPro)
Cre06g2228 1217 Pfam E1-E2 ATPase 225 394 - -
Cre06g2228 1217 NCBIfam heavy metal translocating P-type ATPase 166 719 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cre06g2228 1217 FunFam Putative cadmium/zinc-transporting ATPase 3 28 101 - -
Cre06g2228 1217 CDD P-type_ATPase_HM 116 718 - -
Cre06g2228 1217 Gene3D - 406 667 IPR023214 -
Cre06g2228 1217 NCBIfam cadmium family heavy metal-translocating P-type ATPase 166 721 - -
Cre06g2228 1217 ProSitePatterns E1-E2 ATPases phosphorylation site. 417 423 IPR018303 -
Cre06g2228 1217 MobiDBLite consensus disorder prediction 1005 1033 - -
Cre06g2228 1217 SUPERFAMILY HAD-like 415 717 IPR036412 -
Cre06g2228 1217 NCBIfam HAD-IC family P-type ATPase 189 694 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cre06g2228 1217 SFLD Haloacid Dehalogenase 398 668 - -
Cre06g2228 1217 FunFam Putative cadmium/zinc-transporting ATPase 3 426 548 - -
Cre06g2228 1217 MobiDBLite consensus disorder prediction 757 784 - -
Cre06g2228 1217 FunFam Copper-transporting ATPase 1, putative 204 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g2228 Cre-Chr6:30154281 Cre09g2239 Cre-Chr9:41571191 6.40E-67 dispersed
Cre06g2221 Cre-Chr6:30047019 Cre06g2228 Cre-Chr6:30154281 8.70E-19 proximal
Cre02g1082 Cre-Chr2:9096124 Cre06g2228 Cre-Chr6:30154281 6.50E-55 transposed
Cre02g1140 Cre-Chr2:10378775 Cre06g2228 Cre-Chr6:30154281 9.90E-51 transposed
Cre11g1622 Cre-Chr11:27042233 Cre06g2228 Cre-Chr6:30154281 1.40E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2228 K01534 - csv:101211188 1728.38