Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre06g2235 | ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCCCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAAATCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCCGTCATCAACTAATACGAAAGGGAATGCAGAAAACATTGAGCCAGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTCGGTGCCGATAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGATCTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTCCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGGTTTGA | 2148 | 40.64 | MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRKSLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSPSSTNTKGNAENIEPVVKKNQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGADSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRSRKAEGAAQPHSSHKTSNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKV | 715 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 30244721 | 30251263 | + | CrPI670011_06g022350.1 | Cre06g2235 | 501697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 99 | 147 | - | - | |
Cre06g2235 | 715 | SUPERFAMILY | Homeodomain-like | 498 | 561 | IPR009057 | - | |
Cre06g2235 | 715 | PANTHER | POLYCOMB-LIKE TRANSCRIPTION FACTOR | 34 | 711 | - | GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER) | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 350 | 372 | - | - | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 38 | 72 | - | - | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 106 | 120 | - | - | |
Cre06g2235 | 715 | SMART | PHD_3 | 239 | 292 | IPR001965 | - | |
Cre06g2235 | 715 | SMART | HOX_1 | 497 | 559 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2235 | 715 | ProSitePatterns | Zinc finger PHD-type signature. | 240 | 291 | IPR019786 | - | |
Cre06g2235 | 715 | Gene3D | - | 497 | 569 | - | - | |
Cre06g2235 | 715 | Pfam | Homeodomain | 506 | 550 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 402 | 421 | - | - | |
Cre06g2235 | 715 | FunFam | pathogenesis-related homeodomain protein | 497 | 561 | - | - | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 438 | 462 | - | - | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 51 | 72 | - | - | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 555 | 579 | - | - | |
Cre06g2235 | 715 | SUPERFAMILY | FYVE/PHD zinc finger | 230 | 297 | IPR011011 | - | |
Cre06g2235 | 715 | ProSiteProfiles | Zinc finger PHD-type profile. | 237 | 294 | IPR019787 | - | |
Cre06g2235 | 715 | CDD | PHD_PRHA_like | 239 | 291 | IPR045876 | - | |
Cre06g2235 | 715 | Pfam | PHD-finger | 240 | 291 | IPR019787 | - | |
Cre06g2235 | 715 | ProSiteProfiles | 'Homeobox' domain profile. | 495 | 555 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2235 | 715 | MobiDBLite | consensus disorder prediction | 330 | 385 | - | - | |
Cre06g2235 | 715 | CDD | homeodomain | 503 | 556 | IPR001356 | GO:0003677(InterPro) | |
Cre06g2235 | 715 | FunFam | pathogenesis-related homeodomain protein-like | 231 | 291 | - | - | |
Cre06g2235 | 715 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 288 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1215 | Cre-Chr5:11780009 | Cre06g2235 | Cre-Chr6:30244721 | 1.30E-56 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53917 | PF00628 | PHD | 1.10E-09 | CL0390 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre06g2235 | - | - | - | 0.0 |