Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre06g2235 ATGAGAGGTGTTGAAAGGAGATTGATTGAGAAGGAATCTGGAAAATGTTCCCACGCCAAGCTGGAAACTGGATCAGAGTTGATCTTTCCTCTGAAGTTGAAAAGGTGTAGCAAAATATCCCATTCCAAGCAGAAAAAATCAAGAACGAAGTCACATTCACAGCCAATTTGTTCAACATTCAAGAGGAAATCTCTTCCTAAATCCTTGAGCAAGGGGAATAAAAATGTGACAATTAGGCAATTGGCTGGTAAAAAATTTCGGCTAAAAAAACTTGATACAAAATCTTCCAAGGAGTTACTTTTGTCTAAGCTTCGAGGTGGAAAATCTCCGTCATCAACTAATACGAAAGGGAATGCAGAAAACATTGAGCCAGTGGTCAAGAAAAACCAACAAAGGAAAAGGAGGAAGAACAAAGGAAAAAAGGAAAAAGTTGAGTTAGATGAAGCTTCTCGCCTACAGAGGAGAACGAGATACCTTATAATTAAAATGAAGGCAGAGCAAAACCTTATTGATGCGTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAAATTAGGCCAGAAAAGGAACTTCAGAGAGCCATGAAGCAGATATTAAAGTACAAACTTGGAATCCGTGATGCTATTCGCCAGCTGGATTTGCTTGGTTCAGTAGGATGCATTGAAGACTCTGTTATTGGTCCTGATGGATCTGTCTACCACGAACATATATTCTGTGCAAAATGCAAATTGCGTGAAGCTTTTCCAGACAATGACATTATACTTTGCGATGGAACATGCAACTGTGCTTTTCACCAAAAATGTCTGGATCCACCATTAGACACAAAAAATATTCCTCCAGGAGACCAGGGTTGGTTTTGCAAATTTTGTGAGTGCAAGATGGAAATATTGGAAGGAATGAATGCACATCTTGGTACTCGATTCTCATTGAACATTAGTTGGGAGGACGTTTTCAAAGAAGAAGCTGCTTTCCCAGATGGTGGAAATGCGTTGCTTAATCATGAGGAGGATTGGCCCTCCGATGATTCTGAAGATGATGACTATGATCCAGATAAGAAGGAGAAGGGCTATGACAACGCAAGTGGGGAAGAAAATGATAAGGATGTTTTGGAGGAGTCCAGTAGTTCAACCAGCTTGAGTTGGTCTTTAGATGACGAGGATTTAACTGCTAGAGATGGTATTGGATGTGAAGATCACTTCGGTGCCGATAGCAGCATGGTCTCTGATGGATCCAATGAGGAGGGTATCACATGCGGCCGTCGGCAGCGGCAGGCTGTTGATTATAAAAAGTTATATGTCGAAATGTTTGGAAAGGATGCTCCACCACACGAACAAGAAGTTAGTGAAGATGAAGACTGGGGACCTGCAAAAAGAAGACGGAGAGAAAAGGAATGTGATGCTGCAAGTACTCTCATGTCCCTCTGTGAAAGTGAAAAAAAAAGTCAAGACATTGACATGGAAGCAGAGAAAAAACTTCACAATTCTCACAGTAGATCATTTTTCAGAATCCCACGTTATGCAGTTGAGAAACTTCGCCAAGTGTTTGCTGATAATGAACTTCCCTCTAGAGACGTCAAGGAGAACCTTTCAAAAGAACTGGGTCTTGATGCTGAAAAGGTCAGCAAATGGTTCAAGAATGCACGATATTCTGCACTAAGATCTAGAAAGGCGGAGGGAGCAGCACAACCCCATAGTTCTCATAAGACTTCCAATGAGTCCAGGTTAGCAGATTCAAAGGAAATGTCTGCGAACCTTCTTTCATTAGAGGATGCACCAATAAAAGAACTGCAGCTGAAATTGCGCGGAAGTCATTGCAAGAAAAAGCAGCACAGAAAATCATCACTTGTTTCTTCCAACTATGACAAGGATGGTTTTGATTTTGGTGATGATATAAGCTTGAAGAATCTCCTAAAGAATAGAAAAACAAAGGTAAAGAAGAGGGTAAACTTTGTAGCTAGAGGTGGAGGCCAAGAAGCAGAAGTGGAGATGGAGAGATTGTGTAACATTAAGGGTAGATTAGAGACAATGAAGCAGAAATTACTTAGACTATCAAATAAGAAAGATTATGGGATTTTAGATAGGTCACACATGTTTGAACAGCCTATTGTATATGTTCCTGTAGCAGTGTTAAAGGAAAAGGTTTGA 2148 40.64 MRGVERRLIEKESGKCSHAKLETGSELIFPLKLKRCSKISHSKQKKSRTKSHSQPICSTFKRKSLPKSLSKGNKNVTIRQLAGKKFRLKKLDTKSSKELLLSKLRGGKSPSSTNTKGNAENIEPVVKKNQQRKRRKNKGKKEKVELDEASRLQRRTRYLIIKMKAEQNLIDAYSGEGWKGQSREKIRPEKELQRAMKQILKYKLGIRDAIRQLDLLGSVGCIEDSVIGPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTKNIPPGDQGWFCKFCECKMEILEGMNAHLGTRFSLNISWEDVFKEEAAFPDGGNALLNHEEDWPSDDSEDDDYDPDKKEKGYDNASGEENDKDVLEESSSSTSLSWSLDDEDLTARDGIGCEDHFGADSSMVSDGSNEEGITCGRRQRQAVDYKKLYVEMFGKDAPPHEQEVSEDEDWGPAKRRRREKECDAASTLMSLCESEKKSQDIDMEAEKKLHNSHSRSFFRIPRYAVEKLRQVFADNELPSRDVKENLSKELGLDAEKVSKWFKNARYSALRSRKAEGAAQPHSSHKTSNESRLADSKEMSANLLSLEDAPIKELQLKLRGSHCKKKQHRKSSLVSSNYDKDGFDFGDDISLKNLLKNRKTKVKKRVNFVARGGGQEAEVEMERLCNIKGRLETMKQKLLRLSNKKDYGILDRSHMFEQPIVYVPVAVLKEKV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30244721 30251263 + CrPI670011_06g022350.1 Cre06g2235 501697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre06g2235 715 MobiDBLite consensus disorder prediction 99 147 - -
Cre06g2235 715 SUPERFAMILY Homeodomain-like 498 561 IPR009057 -
Cre06g2235 715 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 34 711 - GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006325(PANTHER)|GO:0006355(PANTHER)
Cre06g2235 715 MobiDBLite consensus disorder prediction 350 372 - -
Cre06g2235 715 MobiDBLite consensus disorder prediction 38 72 - -
Cre06g2235 715 MobiDBLite consensus disorder prediction 106 120 - -
Cre06g2235 715 SMART PHD_3 239 292 IPR001965 -
Cre06g2235 715 SMART HOX_1 497 559 IPR001356 GO:0003677(InterPro)
Cre06g2235 715 ProSitePatterns Zinc finger PHD-type signature. 240 291 IPR019786 -
Cre06g2235 715 Gene3D - 497 569 - -
Cre06g2235 715 Pfam Homeodomain 506 550 IPR001356 GO:0003677(InterPro)
Cre06g2235 715 MobiDBLite consensus disorder prediction 402 421 - -
Cre06g2235 715 FunFam pathogenesis-related homeodomain protein 497 561 - -
Cre06g2235 715 MobiDBLite consensus disorder prediction 438 462 - -
Cre06g2235 715 MobiDBLite consensus disorder prediction 51 72 - -
Cre06g2235 715 MobiDBLite consensus disorder prediction 555 579 - -
Cre06g2235 715 SUPERFAMILY FYVE/PHD zinc finger 230 297 IPR011011 -
Cre06g2235 715 ProSiteProfiles Zinc finger PHD-type profile. 237 294 IPR019787 -
Cre06g2235 715 CDD PHD_PRHA_like 239 291 IPR045876 -
Cre06g2235 715 Pfam PHD-finger 240 291 IPR019787 -
Cre06g2235 715 ProSiteProfiles 'Homeobox' domain profile. 495 555 IPR001356 GO:0003677(InterPro)
Cre06g2235 715 MobiDBLite consensus disorder prediction 330 385 - -
Cre06g2235 715 CDD homeodomain 503 556 IPR001356 GO:0003677(InterPro)
Cre06g2235 715 FunFam pathogenesis-related homeodomain protein-like 231 291 - -
Cre06g2235 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 288 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1215 Cre-Chr5:11780009 Cre06g2235 Cre-Chr6:30244721 1.30E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53917 PF00628 PHD 1.10E-09 CL0390 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre06g2235 - - - 0.0